Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02450 ATGGAGCAAGAAGGAGGTGACACAAACAAGCACCCTCAGGCTCAGGATCGAGTAGTGAAGGAGATGATGCAACAAGGTGATGCACAGGTTCAGGCTCCTCAGCAACCTCAAAAGTGCCCTCGATGCGACTCTTTCAACACCAAATTTTGCTACTACAACAACTATAGCTTGTCACAACCTCGTTACTTTTGCAAAACGTGTAGGAGGTACTGGACTCAAGGTGGAACCTTGAGGAACGTTCCCGTTGGTGGTGGTTGCCGCAAGGGGAAGCGTGCCAAGAGTTCTACTTCATCTTCAGCGGCGGCGGAGAAGTCTTCATCCCGGCCGCAAGAGGTGGTGGTTCAAACGCAGCCACCTTCTTTAACAGTTGTGAGGGCTAAAGACCcttcttcttcttcttcttcctcttcttcAGTTGTGGCTTCACCTTCAATGGGCCCCTTCTACCATAGTGGTGGCTACTTGTCTTCTCTGGCTGCTATGCACTCTCTCAATAACCCTTCATCACACCCTTTTGATCAGTCTCTTAATAGTGACCCCTTGCGTTCTTCAAATTTGGGCCTTCTCTCTGGTTTCAGTGTTTCATCATTTAACTCGCAGCGTGCAATTGGGCCAATTCGTCCACCGCAATTGTACCAAATGGGGAGTGGTGAGAGGGAGTTTGTGTCTCTGTATGAACAAGGTTTGGTTAATCCATCAATATCATCCAGCATGGCAAATACTAATACTAATATCAGTGGTGTTTCCCAGCATGATTGGTCTCGGAGCTTCATCAATAATAATATTGTTAGTAATAGAGCCTCTGATGCATCCTTGTGGAGCACCATCAGCACCACTGTTGGTGGTAACTCTGAGAGGActagtgctagttctagtgctggtgttggttctTCTTCTTTCGTACAAAATCAATGGCCTAATCTTCCAGGGTATGGCCCTCCACCGTGA 948 0.4473 MEQEGGDTNKHPQAQDRVVKEMMQQGDAQVQAPQQPQKCPRCDSFNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKSSTSSSAAAEKSSSRPQEVVVQTQPPSLTVVRAKDPSSSSSSSSSVVASPSMGPFYHSGGYLSSLAAMHSLNNPSSHPFDQSLNSDPLRSSNLGLLSGFSVSSFNSQRAIGPIRPPQLYQMGSGEREFVSLYEQGLVNPSISSSMANTNTNISGVSQHDWSRSFINNNIVSNRASDASLWSTISTTVGGNSERTSASSSAGVGSSSFVQNQWPNLPGYGPPP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02450 315 MobiDBLite consensus disorder prediction 91 142 - -
Cca08g02450 315 MobiDBLite consensus disorder prediction 81 142 - -
Cca08g02450 315 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
Cca08g02450 315 MobiDBLite consensus disorder prediction 1 38 - -
Cca08g02450 315 MobiDBLite consensus disorder prediction 281 306 - -
Cca08g02450 315 MobiDBLite consensus disorder prediction 1 17 - -
Cca08g02450 315 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 4 314 - -
Cca08g02450 315 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Cca08g02450 315 MobiDBLite consensus disorder prediction 281 315 - -
Cca08g02450 315 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 314 IPR045174 GO:0003700|GO:0006355
Cca08g02450 315 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02450 Cca-Chr8 58720864 58722979 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02450 31 109 C2C2-Dof Transcription Factor Family AT5G60200 69.620 3.60e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca08g02450 zf-Dof 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02450 - - gmx:100817065 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02450 08 58720864 58722979 Cca08g02450 08 58720864 58722979 ECH