Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g02369 ATGGCAGAAGAGAGTGAAGGGATTAAGCTGTTTGGCGCAACGATTAGATTGAACAGTGGAGAAGTGAAGAAAGGGGAAAAGGGAAGCGAGAAGACAATAGCCTGCCCCAGATGCAAGAGCATGGAAACCAAATTCTGTTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTTTGCAAGACCTGCCAGAGGTACTGGACCGCTGGTGGGGCCCTCCGGAACGTCGCCGTCGGTGCCGGCCGCCGGAAGGCCAAGCCACCGTGCCATGCGCCCGATGGAGGGCTCTATGAAACTTCCGACCACGACAACAAGTTTGAGATGGTGCAGCCCCAACTTCCCGTGCCTCACACCGATTTCCGCCAGATTTTTCCCCCCAAGCGCCGCAGGATCACCTCTGATCAACACCAAGGTCAATAA 420 0.5405 MAEESEGIKLFGATIRLNSGEVKKGEKGSEKTIACPRCKSMETKFCYFNNYNVNQPRHFCKTCQRYWTAGGALRNVAVGAGRRKAKPPCHAPDGGLYETSDHDNKFEMVQPQLPVPHTDFRQIFPPKRRRITSDQHQGQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g02369 139 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Cca08g02369 139 Pfam Dof domain, zinc finger 31 86 IPR003851 GO:0003677|GO:0006355
Cca08g02369 139 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 4 134 - -
Cca08g02369 139 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Cca08g02369 139 PANTHER CYCLIC DOF FACTOR 2 4 134 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g02369 Cca-Chr8 57635337 57637076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g02369 3 134 C2C2-Dof Transcription Factor Family AT2G34140 48.780 3.69e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca08g02369 zf-Dof 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g02369 - - ccaj:109817782 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g02369 08 57635337 57637076 Cca08g02369 08 57635337 57637076 ECH