Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01129 ATGAGTAGTGAAGGGGACATGTCTAATAAGGATCCGGGTATTATGCTCTTTGGTATGAAGATTCCGTTGCCGGAATGTCAGATTCCGAATGCTTGCAGTGGCTTAAAGAAAACTGAAGTTGAAGTGCCTTGTGTTGAAAACTCTGAGCAACCAGAGAATTCTTCTGATTTAAGGGATAGCAATCAAGAGCCCGTACAAAATAATGTGCAGGAAAATGGGTCAAAAATTAATGCCAAGCCATTGGAGGATAATATGGAGAATAGTAGCACAGACCAAGATAAAATCTTCAAGAAACCAGACAAGATTCTTCACTGTCCACGGTGCAACAGCTTGGACACTAAATTCTGTTATTTCAATAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCCGGTGGAACAATGAGAAATGTTCCTGTGGGTGCTGGGAGACGAAAGAACAAGCACCTAGCTTCTCAATACCGACACATCATCGTAGCTTCCGATGGAATTCCAACTGCTAGGTTTGAAACCAAAGACTCTTCTAGTCACCAACTTGTCTCAACTCTTGAATCTGCTGCTATTTTCAGATCTTCAACAGATAACGGAACTGTGTTGAAATTTGGTCCAGATGCTCCTCTCTGTGAATCCATGGAGTCAATGCTTAATATTAAGGAACCAAAACGAAGTGTTGATGCAAACTCTATCACTTGTGCAGAGAATGGGGAGGAGGAAGTATCCTTATGTGGATCATCTGTGAGCAATTCTTGCACTCTAAGAAACGAATTGCCAGAACATAATGCATCAAAACCTTTGCGGTGTCTCCCTGTTCCTCCATGGATATTCCCTTGGAATCCAAGTTGGAACAATGTGGCTTCCACAGCCGCAGTTCACCCATCTTCGTTGCACATGTGTAGTCATTACAGTGCCGACCCCGCTTCAATGCAGTGGTGTCCCACGCCGATGGTGGCCGTCCAAACCATCTGTCCACCAAGCTTTCCCTTGCAATTTGTTCCTGGATCATACTGGGGTGGACCACCTGTGTGGGGTGCTGGAACAGGATCTGTATCAATAGGTTTCAACGCTTGCCTTTCGCCTACTTCCTCCACTAGTAACAGCTGCTGCTCAGGTAATGGCTCGCCGACACTTGGCAAACACACCAGAGATACTGTTTTCACAGATGAAGAGAAGTCAGACATGTGTGTTTTGGTTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAATGTCCTATATGGTCTACTTCATTAGGGATCAAGCCTGATAACCTGCAATATGTCTCAGAAGATGCTATTTCCAAAAGGGAAAAGCCTAAAGAAGGCAAAGACCGTGTGTTAGGTGTGTCTCAAATCTTGGAAGCTAATCCTGCAGCAATTTCTCGTGCTCATGCATTCCAAGAGAGCATATAA 1440 0.441 MSSEGDMSNKDPGIMLFGMKIPLPECQIPNACSGLKKTEVEVPCVENSEQPENSSDLRDSNQEPVQNNVQENGSKINAKPLEDNMENSSTDQDKIFKKPDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLASQYRHIIVASDGIPTARFETKDSSSHQLVSTLESAAIFRSSTDNGTVLKFGPDAPLCESMESMLNIKEPKRSVDANSITCAENGEEEVSLCGSSVSNSCTLRNELPEHNASKPLRCLPVPPWIFPWNPSWNNVASTAAVHPSSLHMCSHYSADPASMQWCPTPMVAVQTICPPSFPLQFVPGSYWGGPPVWGAGTGSVSIGFNACLSPTSSTSNSCCSGNGSPTLGKHTRDTVFTDEEKSDMCVLVPKTLRIDDPNEASKCPIWSTSLGIKPDNLQYVSEDAISKREKPKEGKDRVLGVSQILEANPAAISRAHAFQESI 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01129 479 Pfam Dof domain, zinc finger 100 157 IPR003851 GO:0003677|GO:0006355
Cca08g01129 479 ProSitePatterns Zinc finger Dof-type signature. 105 141 IPR003851 GO:0003677|GO:0006355
Cca08g01129 479 MobiDBLite consensus disorder prediction 45 92 - -
Cca08g01129 479 PANTHER CYCLIC DOF FACTOR 3-LIKE 7 478 - -
Cca08g01129 479 PANTHER CYCLIC DOF FACTOR 2 7 478 IPR045174 GO:0003700|GO:0006355
Cca08g01129 479 ProSiteProfiles Zinc finger Dof-type profile. 103 157 IPR003851 GO:0003677|GO:0006355
Cca08g01129 479 MobiDBLite consensus disorder prediction 47 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01129 Cca-Chr8 30965302 30968465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01129 11 478 C2C2-Dof Transcription Factor Family AT5G39660 34.091 1.84e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca08g01129 zf-Dof 5.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01129 - - ccaj:109792807 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01129 08 30965302 30968465 Cca08g01129 08 30965302 30968465 ECH