Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01038 ATGAGTACCAACAACGAAAGCAGCACCATCTTCCCCACCCCACATGGCCAAATAACCAATTCTCAATTTATCAATAGCCAGGTTCCATCTCAAGCTACACAACAAGTGAATGATATCAGGAAAAAGCACTATAGAGGAGTGAGGCAAAGACCATGGGGCAAATGGGCAGCTGAAATAAGAGACCCTAAAAAAGCAGCAAGAGTTTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCATCTGCTTATGATGCTGCAGCCCTGAGGTTCAAAGGCAACAAAGCCAAACTCAATTTCCCCGAACGCGTTACTCTACcaatatcatcaccatcaaccaatgataataataacgacaacaacaacaaTACTTCAGCATCTAATAACCCTCTTCCACAAGGCATGCAAAACACTAACAAATCTCTTGCATCAGAAGGGTTTCCGAATCTGATGGAGTATGCGCAGTTGCTGTGTTGCAGAAACGATGATGATATCCAGCGTGTTGCATCGGGGCTCTACcagcagcagcagcagcatcaAGTGCCGTTTTTTGTGCCTGAATATGCGTCTTCTTCGGCGATGGCTTCGTCAAATTCAGAGAATGAGGGTCAACGTGGGGTTGGAGCCTTTGGTTTTTTTGATGAAGGGAACGCGAGGGGATCGTAG 663 0.4193 MSTNNESSTIFPTPHGQITNSQFINSQVPSQATQQVNDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAASAYDAAALRFKGNKAKLNFPERVTLPISSPSTNDNNNDNNNNTSASNNPLPQGMQNTNKSLASEGFPNLMEYAQLLCCRNDDDIQRVASGLYQQQQQHQVPFFVPEYASSSAMASSNSENEGQRGVGAFGFFDEGNARGS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01038 220 MobiDBLite consensus disorder prediction 104 142 - -
Cca08g01038 220 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Cca08g01038 220 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Cca08g01038 220 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Cca08g01038 220 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Cca08g01038 220 MobiDBLite consensus disorder prediction 194 220 - -
Cca08g01038 220 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 15 196 - -
Cca08g01038 220 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Cca08g01038 220 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Cca08g01038 220 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Cca08g01038 220 PANTHER DNA-BINDING DOMAIN 15 196 IPR044808 GO:0003700|GO:0009873
Cca08g01038 220 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01038 Cca-Chr8 26302397 26305038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01038 18 152 AP2-EREBP Transcription Factor Family AT5G61890 54.074 2.54e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca08g01038 AP2 2.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01038 08 26302397 26305038 Cca07g00740 07 11436554 11439395 PCT