Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00860 ATGTCCTTGCTAACGGTGGCGCACCAAAGGGGTTCAGGCGAGTTTATCCGGTTCACGGCGAATCGTGACGGCGACGATGGTAATAGTGAATATGGTTATGGACATGATGGTGATGGTGGTGACGACAACAATAATAGCGGTGTGTCGGAGTCACTAGGATTGAATTTCAACCAAGTGATGCAACACGGTGGTGTGGCAATGCAAGGTGGTTCTTTGGCTTCAGGGTACAACAGGGGTGATCCAGAGTTTAGAGAAATGGTTTCGGCTTTGACACACGTGGTGTCATCAGGGTCTAGCCAGAGGAACATCGAAAGTGGTTATCCTATGATGTCTGGTTTTGGATATGCATcttctctttctcgtttctcttcttcttcttctccttctccttctTGGGTTGGTCACAAAAGAGGGAGAGAAGAAGCACAAGAGAGTGGCTCATCACATAACTTGATGcagcaacaacaacaacaacaaAGTGCCACAAGACTCTTCAGAAACGTTGGTGACTTCATGGTGCCTTCTCAAGGAGACTCATCAACAGTGACAGAAGAACATCCCACCTCTACAACTGCTTCTTCAGTAACCGCCATCATGACAGCAGTTTCTGATACTGCCATGACGACGGTTACTGAATCAGCTTCATCCGGAGGTGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGGCAGAGGCCATGGGGGAAGTGGGCAGCAGAAATCCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGCACATTTGAAACTGAAGAAGCAGCAGCTAGAGCATATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGAGCAAAACTAAACTTCCCTGAAAATGTTAGAGCAGTTCCACCTCTTCAACCTTTTCAAGCCACCACTAGACTAACTGTTTCCGACTCCTCCACCTCCCAATTCCGGCCACTGGCGGCGCCGCCGCCTCCATTCATGCAGCCACCACAGATTCAGGCTTCCCCTGACTTGATCAGAGACTACTTGCAATACTCTCAGCTTCTACAGAGTGACTTTcaacatcagcaacaacagcaacaacaacaagaacagcaacaacaACGTTCTAACTTGCTTCAGTGGTACTATAATGCACAATTGGCATCACTTCAATCACATTCATTGTTACCATCATCACCTTCATTGTCTTCTAATATGTCACCAACATCATTCCCTTCATTCTCAACATCTACTCAGTTGTCCTCTGCTTCATTTCCCTTGTTTTCAAGTCAACAAATGGGCTATTTACAGCCACCGGAAAACCGCCCTCCCGCCGGCGGCCGGCCAGAGTTTCCGCCGTCAACATGGTCAAATACCAGTGGCCATCCACCACCTTCTGGTTGA 1365 0.4462 MSLLTVAHQRGSGEFIRFTANRDGDDGNSEYGYGHDGDGGDDNNNSGVSESLGLNFNQVMQHGGVAMQGGSLASGYNRGDPEFREMVSALTHVVSSGSSQRNIESGYPMMSGFGYASSLSRFSSSSSPSPSWVGHKRGREEAQESGSSHNLMQQQQQQQSATRLFRNVGDFMVPSQGDSSTVTEEHPTSTTASSVTAIMTAVSDTAMTTVTESASSGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFETEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPLQPFQATTRLTVSDSSTSQFRPLAAPPPPFMQPPQIQASPDLIRDYLQYSQLLQSDFQHQQQQQQQQEQQQQRSNLLQWYYNAQLASLQSHSLLPSSPSLSSNMSPTSFPSFSTSTQLSSASFPLFSSQQMGYLQPPENRPPAGGRPEFPPSTWSNTSGHPPPSG 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00860 454 MobiDBLite consensus disorder prediction 19 37 - -
Cca08g00860 454 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 82 419 - -
Cca08g00860 454 MobiDBLite consensus disorder prediction 300 325 - -
Cca08g00860 454 PRINTS Ethylene responsive element binding protein signature 225 236 IPR001471 GO:0003700|GO:0006355
Cca08g00860 454 PRINTS Ethylene responsive element binding protein signature 247 263 IPR001471 GO:0003700|GO:0006355
Cca08g00860 454 MobiDBLite consensus disorder prediction 439 454 - -
Cca08g00860 454 MobiDBLite consensus disorder prediction 384 424 - -
Cca08g00860 454 SMART rav1_2 224 287 IPR001471 GO:0003700|GO:0006355
Cca08g00860 454 MobiDBLite consensus disorder prediction 173 193 - -
Cca08g00860 454 MobiDBLite consensus disorder prediction 145 165 - -
Cca08g00860 454 MobiDBLite consensus disorder prediction 118 193 - -
Cca08g00860 454 Pfam AP2 domain 224 273 IPR001471 GO:0003700|GO:0006355
Cca08g00860 454 MobiDBLite consensus disorder prediction 384 454 - -
Cca08g00860 454 Gene3D AP2/ERF domain 223 283 IPR036955 GO:0003700|GO:0006355
Cca08g00860 454 ProSiteProfiles AP2/ERF domain profile. 224 281 IPR001471 GO:0003700|GO:0006355
Cca08g00860 454 MobiDBLite consensus disorder prediction 118 132 - -
Cca08g00860 454 MobiDBLite consensus disorder prediction 18 47 - -
Cca08g00860 454 PANTHER DNA-BINDING DOMAIN 82 419 IPR044808 GO:0003700|GO:0009873
Cca08g00860 454 SUPERFAMILY DNA-binding domain 224 282 IPR016177 GO:0003677
Cca08g00860 454 CDD AP2 224 283 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00860 Cca-Chr8 19216532 19219058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00860 218 285 AP2-EREBP Transcription Factor Family AT5G61890 80.882 4.80e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca08g00860 AP2 2.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00740 07 11436554 11439395 Cca08g00860 08 19216532 19219058 PCT
Cca08g00860 08 19216532 19219058 Cca02g02149 02 41731586 41742501 PCT