Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00302 ATGGAAAACCTTCTTGGCCTTCTCAGGGTTCGCATCAAGCGCGGTGTCAACCTCGCCGTTCGTGATGTCCGAAGCAGCGACCCTTATGTTGTCATCAAGATGTACAACCAGAAACTAAAGACTCGTGTGATTAAAAAAGATGTGAATCCTGAGTGGAATGAAGACCTTACACTTTCTGTTATAAATCCGAATCACCCAGTTAAACTGACTGTGTATGACCACGACACATTTAGCAAAGATGACAAAATGGGAGATGCAGAATTTGACATTTTGCCCTTTATAGAAGCCTTGAAGACGAACTTAACTGGCCTTCCAAATGGTACTGTAATCACAAGAGTGCAGCCAAGCAGTAATAACTTCCTGGCAGATGAGAGCTGCATCAGTTATTGCAATGGCAAGGTCGTCCAGGATATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTACAGTGGATTGATCTTCCTGGTTCTAAGGGTTTATGA 498 0.4277 MENLLGLLRVRIKRGVNLAVRDVRSSDPYVVIKMYNQKLKTRVIKKDVNPEWNEDLTLSVINPNHPVKLTVYDHDTFSKDDKMGDAEFDILPFIEALKTNLTGLPNGTVITRVQPSSNNFLADESCISYCNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00302 165 CDD C2_ArfGAP 5 148 - -
Cca08g00302 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Cca08g00302 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cca08g00302 165 PANTHER CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN 1 164 - -
Cca08g00302 165 Gene3D C2 domain 3 163 IPR035892 -
Cca08g00302 165 SMART C2_3c 7 102 IPR000008 -
Cca08g00302 165 Pfam C2 domain 6 91 IPR000008 -
Cca08g00302 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 164 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00302 Cca-Chr8 4408832 4411368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00302 38 165 C2H2 Transcription Factor Family AT1G70790 58.462 1.03e-51 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00284 06 7477272 7481632 Cca08g00302 08 4408832 4411368 ECH
Cca08g00302 08 4408832 4411368 Cca08g00302 08 4408832 4411368 ECH
Cca09g02833 09 53894147 53895229 Cca08g00302 08 4408832 4411368 PCT