Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00282 ATGAAAGGAGTTTCAAGGGGGGAAATGGTGGAAGAAGTGAAGAAGCAGGTGTGGTTAGCTGGTCCTCTCTTCACTGTTGGTGTGCTGCAGTACAGTTTGCAGGTGATATCTGTTATATTTGTTGGTCATCTTGGTGAGTTGCCACTTTCTGCTGCTTCACTTGCCACTTCCTTTGCATCTGTCACTGGTTTCAATTTGTTGatgggtatggctagtgcattggacaccttatgtggtcagtcatttggggcagggcagcaccatatgctcagcatacacatgcaaagagctacctttgttctctcaattgtaagtgtctttctagcaatcatgttggtattcaccaaacacattctagttgccatgcatcagcaagttgccatagctgaggaggctggggtatatgccctttacatgattccaagcctttttgcttatggtatccatcaatgccttctcaagtttctacaaagtcaaaacattgtcttccccatggtgctgagctctgcagtggtggctttgcttcacatccctttgtgttgggtgttcgtattcaaatcaggacttggaagtaagggagctgccatagcaaattcagtatcatattggtttaatgtgctgctgataggactttatgtgaagttttcttcctcgtgtgcaaaatcatggactggcttctcaaagaaggccctgaaaaatatcctagaattccttaaaatttccattccttcagcttttatgctttgcttaaaggtttggacatttgaactaatggttcttctatctggccttcttccaaatccacagttagaaacttcagtgttgtctatatgTCTTAACACATTTGTAATTGCCTGGATGATTCCCTTTGGATTAAGCTGTGCTGTGAGCACAAGGGTCTCAAATGAACTAGGGGCTGGTCATCCACAATCTGTAAGTCTTGCAGTTAGAGTTGCTCTCTTCCTTGTCCTTGCTGAGGGCATTATGATGGTATTACTCATGATCCTGCTAAGAAAAATATGGGGCAATCTTTACAGCAGTGAAACAGAAGTTATAAAATATGTAGCAGCCATGATGCCTATTCTTGCTATCTCCAGCTTCCTTGATGGGATTCAAAGTGTTCTTTCAGgcattgcaagaggttctggttggcagaagattggtgcaattgtgaatcttggatcattttattttgtgggagttccttctgcagtggtgttggcttttgttttgcacatgaaagggaagGGCCTTTGGTTGGGGATTGTTTTTGCATTCATCCTGCAAGTCATACTTTTTGGTCTCATTACCATTCGAACCAGCTGGAAGAAAGAAGCAAATAAGGTAGCAGTGAGAGTCAAAGATACCAAAATCCCTCTGGAGTTGCCTCAGGCTCATGGAGATTCATTTACATTATGA 1419 0.2016 MKGVSRGEMVEEVKKQVWLAGPLFTVGVLQYSLQVISVIFVGHLGELPLSAASLATSFASVTGFNLLMGMASALDTLCGQSFGAGQHHMLSIHMQRATFVLSIVSVFLAIMLVFTKHILVAMHQQVAIAEEAGVYALYMIPSLFAYGIHQCLLKFLQSQNIVFPMVLSSAVVALLHIPLCWVFVFKSGLGSKGAAIANSVSYWFNVLLIGLYVKFSSSCAKSWTGFSKKALKNILEFLKISIPSAFMLCLKVWTFELMVLLSGLLPNPQLETSVLSICLNTFVIAWMIPFGLSCAVSTRVSNELGAGHPQSVSLAVRVALFLVLAEGIMMVLLMILLRKIWGNLYSSETEVIKYVAAMMPILAISSFLDGIQSVLSGIARGSGWQKIGAIVNLGSFYFVGVPSAVVLAFVLHMKGKGLWLGIVFAFILQVILFGLITIRTSWKKEANKVAVRVKDTKIPLELPQAHGDSFTL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00282 472 TIGRFAM matE: MATE efflux family protein 22 419 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00282 472 Pfam MatE 22 182 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00282 472 Pfam MatE 243 405 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca08g00282 472 PANTHER MULTIDRUG RESISTANCE PROTEIN 6 453 - -
Cca08g00282 472 CDD MATE_eukaryotic 12 448 IPR045069 GO:0042910|GO:1990961
Cca08g00282 472 PANTHER PROTEIN DETOXIFICATION 6 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00282 Cca-Chr8 4059966 4065181 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00282 08 4059966 4065181 Cca09g02797 09 53595330 53598511 ECH
Cca02g02593 02 47046600 47051072 Cca08g00282 08 4059966 4065181 ECH
Cca08g00282 08 4059966 4065181 Cca08g00282 08 4059966 4065181 ECH