Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00267 ATGGATCCACCACCCCCATCTGTCGCCATCATCGCCCCTACCACCACTCAAAAGACTTATTCTGACTCAGTAGAGTCTCTATCACCGCGTTCCCGCAACGTGGAAGTGGTTGCGGGAGCGTGGAATGATGAGACTCTACCGGTGGTTCCTGGCGCGAAGCTGCGGCTGATGTGCAGCTATGGTGGCCACATCATACCACGCCCTCATGACAAGTCCCTCTGCTATGTCGGCGGCGACACGAGGATTGTGGTGGTGGACCGCCACTCGTCGTTAAAAGACCTGTGTGCAAAGCTTTCTCGCACCATCCTCAATGGAAGACCCTTCACACTCAAGTACCAGCTTCCGAGTGAAGACCTTGATAGCCTCATCACTGTGACCACTGATGAAGATCTTGACAACATGGTGGAAGAGTACGATCGAATTGCCGCAAAAGGTTCGGCTTCTTCGCGGCTCAGGGTGTTCCTGTTCTTCACCAAACCTGAGGCCACGGTTTCAATGGGGTCACTTCTTGATGATGTCAAGTCAGAGACATGGTTTGTTGATGCACTCAATAACTCTGGAATGTTAAGCAGGGGGGTGTCAGATTCTGCTGCAGGGGATTCTTTTGTAAACCTtgatggagatggtgttggtgttagtgctagtgGTTCAAGCAACAACTTGGAGGCTTTGCCTGATGCTAACAACAAGGCTAAGAATTTGCCTGAAGTGGTGCAAGTGCAATCAACTCCTGGTTCACCTATGATGGAGAACAGTGCTTCTTCTCCTTCTTTCTCTCCTTCTATGGCTAATCTGCCTCCGATTCGGGTTCGGGTTGATGACAATGGTAGTAGGCTTCAGCAAGAGAACAAGGTTGGGGTGATGGTGGAGGAGCAGTTTGCTCAGATGACAATTGCAAGTGGAGTAAAGCCAGATGATGGGTTGGTGAATGTTGTTTCTTCTGCAATGGCTGTGCCTCCAATTCCTGCATCAGTGACTATGACATCAGTTGGGGTAGCTACCACCAGTGATACTGTGATGAATCGAGTTGTATCTGATGATGAGAGACCAGATCACGTGTTTAGGAAGCCCCCTTTACCATTGCAACTTGTGCAGCCAAAGACTAGTGGTGGTTTGAGTTTGCCTTCTCCTGATTCAGTAACAAGTGATAGTAGTATTGCATCTGCAAATTCATTCTCCAAGACTGTGTACTATCAAGACCAAGTCCAAGCCACACTACTAGACAACAACAAAGCTGTTTTTTTACCAAATGCCAAGAGTGAAATATCTGATCAGGTGGTTCAGGTCTCTGGACAAGTTCATGATTCTGGCTACATGTTACCCCCACAGGTGGATCAAACCAAGCAACTCCATCAGCAGAAGCCATTGGCCCATGCCAGCACTCATTACATCCACCACACTGCAGCCACAGTTCCAGTGCCAGTTTCATCATACTACCCAGTCTATGCCCCACCACCACAACAACAACTTCACCCTCCAATTGGTCAACAACAGTACCCAGTTTATGTGATGCCTGTTGGGCCTACACAGCCATACAACATGGCCTTGCAGCCCAATATAGGTGACCCAAATGTGGTAAGGCCACTAATGCCACAAAGTGCTGTTAGTGTTACCTCAGCAGCATACAAGGATGGTACTCCACCTATCTACCCCACCAAGTCAGTTACCCCCCCAACTATACCTGAGGTGACTCCAAGTGTTTACAAGGCTCCTCCTGTGGCATCAAATCCTGCATATGCTCCAATACCCGCCAACCAATTTCAGCCACAGTATGTGGGTTTGCCTCAGTTCCATCATCCACCACAGTCCATTGCTGTGGCTCCCTCTAGTACTACTAATTATGGTTATGAATATGGTGGCCATGTGCAAGAACAAGCATACTACACACAACATCAACTAACTACGACTGCTCCATTGCTTCCTCAGTACCAATCCATGACCCCAGCTGCAGCTGCTGCAGCACTATCAGATGCTTCAAGTCAATATCCTGCAGACAACATTCAGCAGCCAAATAGAGCATCACAGCCAGTATAA 2034 0.4779 MDPPPPSVAIIAPTTTQKTYSDSVESLSPRSRNVEVVAGAWNDETLPVVPGAKLRLMCSYGGHIIPRPHDKSLCYVGGDTRIVVVDRHSSLKDLCAKLSRTILNGRPFTLKYQLPSEDLDSLITVTTDEDLDNMVEEYDRIAAKGSASSRLRVFLFFTKPEATVSMGSLLDDVKSETWFVDALNNSGMLSRGVSDSAAGDSFVNLDGDGVGVSASGSSNNLEALPDANNKAKNLPEVVQVQSTPGSPMMENSASSPSFSPSMANLPPIRVRVDDNGSRLQQENKVGVMVEEQFAQMTIASGVKPDDGLVNVVSSAMAVPPIPASVTMTSVGVATTSDTVMNRVVSDDERPDHVFRKPPLPLQLVQPKTSGGLSLPSPDSVTSDSSIASANSFSKTVYYQDQVQATLLDNNKAVFLPNAKSEISDQVVQVSGQVHDSGYMLPPQVDQTKQLHQQKPLAHASTHYIHHTAATVPVPVSSYYPVYAPPPQQQLHPPIGQQQYPVYVMPVGPTQPYNMALQPNIGDPNVVRPLMPQSAVSVTSAAYKDGTPPIYPTKSVTPPTIPEVTPSVYKAPPVASNPAYAPIPANQFQPQYVGLPQFHHPPQSIAVAPSSTTNYGYEYGGHVQEQAYYTQHQLTTTAPLLPQYQSMTPAAAAAALSDASSQYPADNIQQPNRASQPV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00267 677 CDD PB1_UP2 57 156 - -
Cca08g00267 677 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 1 670 - -
Cca08g00267 677 ProSiteProfiles PB1 domain profile. 53 156 IPR000270 GO:0005515
Cca08g00267 677 MobiDBLite consensus disorder prediction 659 677 - -
Cca08g00267 677 Pfam PB1 domain 69 156 IPR000270 GO:0005515
Cca08g00267 677 MobiDBLite consensus disorder prediction 655 677 - -
Cca08g00267 677 MobiDBLite consensus disorder prediction 361 383 - -
Cca08g00267 677 SMART PB1_new 68 158 IPR000270 GO:0005515
Cca08g00267 677 Gene3D - 73 157 - -
Cca08g00267 677 MobiDBLite consensus disorder prediction 242 262 - -
Cca08g00267 677 MobiDBLite consensus disorder prediction 366 383 - -
Cca08g00267 677 PANTHER OS05G0427100 PROTEIN-RELATED 1 670 - -
Cca08g00267 677 SUPERFAMILY CAD & PB1 domains 69 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00267 Cca-Chr8 3751486 3754509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00267 52 206 MAP Kinase Kinase Kinase AT1G16270 40.000 9.14e-28 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00306 06 8250594 8253536 Cca08g00267 08 3751486 3754509 ECH
Cca02g02618 02 47357509 47359780 Cca08g00267 08 3751486 3754509 ECH
Cca08g00267 08 3751486 3754509 Cca08g00267 08 3751486 3754509 ECH