Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00236 ATGGCTGAATACACAGAAAACTTGCAAAGCATTAGACCCTCCTCATTTCCTTTCTTAGATATTGATCCAAGCATGGAACTCCTTAACCAATTCATAGGGATGAACCAACATGTTCTCGAAAACACAAACTTGACTATGCACAACTTGATGCCTTTCTCCTGTGACACCTTCTTGGGTCCCCAAGAACCTGAGTTTCCAGGAAACTTGGAAGAAAATTTCCCTTCTCTTAATTCACTTCCTGTTTCCCTCCCCATTTTCCAAGCAGAAAACGAGTTCCATGAAGGTAAAAAGAGGAAAACAATGGATCTTCCTGAGACCAGTTCAGCTAACTCAACTCCTGCAGTTTCTGACAGTGGAACTGGAAGCAAGATTAAACATAGTTCTGGAAGAGGAAAGAGAGTAAAAAACAATGTAACAGATGAGGAGAAAGCAAAGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAACGAGAAATTAAGGTGCTTGCAGAACATTGTTCCAGGATGTTACAAGACCATGGGAATGGCAGTGATGTTGGATGAAATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGCACCTTTTATGACTTCAATTCCGAGACAGATGCTTTGGAAACAATGCAGAGAGCAAGGGCATCCGAGGCAAAAGAGTTAGCAAAATATAAGAGAGAAGGGTATGGAGGAGTTTCTTGCTTTCAACCAACATGGCCTCTTTGA 804 0.4167 MAEYTENLQSIRPSSFPFLDIDPSMELLNQFIGMNQHVLENTNLTMHNLMPFSCDTFLGPQEPEFPGNLEENFPSLNSLPVSLPIFQAENEFHEGKKRKTMDLPETSSANSTPAVSDSGTGSKIKHSSGRGKRVKNNVTDEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELAKYKREGYGGVSCFQPTWPL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00236 267 Gene3D - 156 218 IPR036638 GO:0046983
Cca08g00236 267 PANTHER TRANSCRIPTION FACTOR BEE 1 2 266 - -
Cca08g00236 267 SMART finulus 162 212 IPR011598 GO:0046983
Cca08g00236 267 MobiDBLite consensus disorder prediction 104 125 - -
Cca08g00236 267 MobiDBLite consensus disorder prediction 98 135 - -
Cca08g00236 267 CDD bHLH_AtBPE_like 146 231 - -
Cca08g00236 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 222 IPR036638 GO:0046983
Cca08g00236 267 Coils Coil 233 253 - -
Cca08g00236 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 206 IPR011598 GO:0046983
Cca08g00236 267 Pfam Helix-loop-helix DNA-binding domain 160 207 IPR011598 GO:0046983
Cca08g00236 267 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 266 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00236 Cca-Chr8 3272304 3274236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00236 45 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.893 2.16e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca08g00236 HLH 0.00017 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00236 08 3272304 3274236 Cca09g02708 09 52755045 52756869 ECH
Cca07g02357 07 52158938 52162730 Cca08g00236 08 3272304 3274236 ECH
Cca06g00332 06 9384301 9385746 Cca08g00236 08 3272304 3274236 ECH
Cca08g00236 08 3272304 3274236 Cca08g00236 08 3272304 3274236 ECH