Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00224 ATGCGCTTGAGTTGCAATGGCTGCCGCGTCCTCCGCCGTGGGTGCACACCGGAGTGCCCCATTCGCACCTCCCTCCAATGGATCCATTCACCCAACTCTCAATCCAACGCCACCCTCTTCCTCGCCAAGTTCTATGGCCGCCAAGGCCTCCTCAACCTCCTCACCACCGCTTCCACTCATCTCCAACCAGCGGTTTTCAAATCTTTGCTCTACGAAGCTTGCGGTCGGATGGTGAACCCGATTTTCGGCTCGACCGGGTTGCTCTCGAGCGGGAATTGGCACCTCTGTGAAGAAGCGGTCAAAGCCGTTCTTAGCGGCGCGCCGATTCAGCAGGCTCCGTTGGACGGCGCGGCGAGCCTGCAGCTTGAGGCTTGCGATATTCGCCACGTGGCAAAGGGCGATAAATCGTGCGGCTCTGACGGGCTCCACAAGGTGAAGTCTCGGACCAGCAAGTTCAAGCGCCGCGCCTTGAAGCCCACGGTGGACTCAGCCGTGGCTGAGTTGGCTCGAAGCGAGTTGAACGGCTCGGTGAGTCGTGAATCGGGGTCTGGGGTGACTCGGACGAGTGAAGCCGATAGCGGCTCCGTGGGGAGTGTGGGGCCGGTTCGAGCCGCCGATGGCGAAATGGAGCTGGAATTGACTTTGGGCTGGGGTTCAATGAAGAGACCAATGGTTCCGGTGATGCCACGTGTAGGGCTGGATCTATCTGGCTAG 714 0.6022 MRLSCNGCRVLRRGCTPECPIRTSLQWIHSPNSQSNATLFLAKFYGRQGLLNLLTTASTHLQPAVFKSLLYEACGRMVNPIFGSTGLLSSGNWHLCEEAVKAVLSGAPIQQAPLDGAASLQLEACDIRHVAKGDKSCGSDGLHKVKSRTSKFKRRALKPTVDSAVAELARSELNGSVSRESGSGVTRTSEADSGSVGSVGPVRAADGEMELELTLGWGSMKRPMVPVMPRVGLDLSG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00224 237 MobiDBLite consensus disorder prediction 175 195 - -
Cca08g00224 237 MobiDBLite consensus disorder prediction 175 203 - -
Cca08g00224 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 171 - -
Cca08g00224 237 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Cca08g00224 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 171 - -
Cca08g00224 237 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00224 Cca-Chr8 3136749 3138575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00224 1 230 AS2 family AT3G02550 44.444 1.91e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca08g00224 LOB 1.3e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02664 02 47946229 47947174 Cca08g00224 08 3136749 3138575 ECH
Cca08g00224 08 3136749 3138575 Cca08g00224 08 3136749 3138575 ECH