Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02510 ATGCGGATGAGCTGCAATGGCTGTCGCGTTCTCAGAAAGGGTTGCAGCGACAATTGCAGCATCAGACCCTGTTTGCAATGGATCAAGAACCCAGAATCTCAAGCCAATGCTACTGTCTTCCTCGCCAAGTTCTATGGTCGGGCTGGTCTCATGAACCTCGTTAACGCAGGCCCCGAACATCTTCGTCCAGCGATCTTTCGTTCCTTGTTATACGAGGCATGCGGTCGGATAGTCAACCCGATTTACGGTTCGGTCGGTTTGTTATGGTCTGGGAGCTGGCAGCTCTGTCAAGCCGCCGTTGAAAACGTCTTGAAAGGCGCGCCCATCACTCCGATCACCTCCGAAGCCGCGGCGAGCGGCCGGGGCCCACCGCTCAAGGCCTACGACATACGCCACGTCTCCAAAGACGAGAACTCCGCCGCCTCCAACGAGACTCAGCAACAACAGCAGCGGGTCAAGACTCGGTCAAGAGTGAAGCGACccgccgccgccgccaccgccAAGCCCAAATCCACCCACGAAAACAACAAGGAATCGGGTTCGGGCGAACCGGGTTTCGTGGTGACGAGCGAGTGGACCGAGGAGGCGTTGAACCGGTCCGGGAGTCACGATTCGTCGCTGAGCCATCAATCAGAGGCGGCGAATGCGGTGGAAAGCGAGAGCATGGTGTCGGTGGAGACGGCGGAGACTTCGAACCTCTTTCGCGACGAACCGGAGTCGCACCCGAAACGCGTCGACCGAAGCGAGGAGGGGGGTGAGCATGTTGGGTTGGAGCTTACGCTGGGGTTTGAACCGGCCTCACGTGCGGTTCACGTGGTTCCGGTGAAGAAGAGAAGGATTGAGTTGAAGGAGTTTAGTGGGTCGGCTCAGAGTGGCTCGTGCAAGATGGAGCTGGGGCTTGAGTACTCGGCTTGA 915 0.5661 MRMSCNGCRVLRKGCSDNCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVENVLKGAPITPITSEAAASGRGPPLKAYDIRHVSKDENSAASNETQQQQQRVKTRSRVKRPAAAATAKPKSTHENNKESGSGEPGFVVTSEWTEEALNRSGSHDSSLSHQSEAANAVESESMVSVETAETSNLFRDEPESHPKRVDRSEEGGEHVGLELTLGFEPASRAVHVVPVKKRRIELKEFSGSAQSGSCKMELGLEYSA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02510 304 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Cca07g02510 304 MobiDBLite consensus disorder prediction 193 231 - -
Cca07g02510 304 MobiDBLite consensus disorder prediction 232 252 - -
Cca07g02510 304 PIRSF AS2 1 303 IPR017414 -
Cca07g02510 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 301 - -
Cca07g02510 304 MobiDBLite consensus disorder prediction 136 252 - -
Cca07g02510 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 301 - -
Cca07g02510 304 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02510 Cca-Chr7 53918554 53920816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02510 1 300 AS2 family AT3G02550 57.000 1.54e-107 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca07g02510 LOB 2.8e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02510 07 53918554 53920816 Cca07g02510 07 53918554 53920816 ECH
Cca07g02510 07 53918554 53920816 Cca09g00464 09 11414169 11415713 ECH
Cca02g02664 02 47946229 47947174 Cca07g02510 07 53918554 53920816 ECH