Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02475 atgtgggacttggatttttcccaataCACTGGATTTTTCCCAATAGAGGAAGTGAAGAAGGTGGGGAGAATAGCAGCTCCAATGGTGGTTGCAAGTGTCTTGCAATATCTAATGCAAGTGGTGTCCATGGTAATGGTTGGTCATCTTGGTCAGCTATCTCTTTCAAGTGTTGCTATTGCAACCTCTCTCACCAATGTTTCTGGCTTTAGTGTTTTATCAGGGATGGCTGGTGGATTGGAAACACTATGTGGGCAAGCATTCGGAGCAGAGGAATACGAAAAAGTTGGACTATACACTTACACTGCCATTATATGCCTCACTTTGCTTTCTTTCCCAATCACCCTTCTATGGGTTTTCTTGGACAAAATTTTAGTTCTCTTAGGCCAAGACCCTTCCATATCCCATGAAGCACGTAAATACGCCATTTGGCTAATTCCCGCTCTGTTTGGTTCAGCAATTCTTAAGCCCCTAACGCGTTTTCTCCAGACACAGAGTTTGGTTTCTCCCATGATGCTAAGCTCCGCTCTTGTTTTGTGCCTCCACGTGGCAATGTGTTGGAGCCTCGTGTTCAAACTCGGGTTGGGACACGTTGGTGCTGCCATTGCTTTCAGCGTTTGCGTTTGGTTAAACGTGATTCTGCTTTTCTCCTTTGTCAGATACTCCTCTGCTTGTCACAGAACGCGCCTTCCGTTTTCAACCAATGCTTTCCTTCGTATCGGAGACTTCTTCCGATTTGCTGTCCCTGCAGCAGTCATGGTTTGTCTTAAATGGTGGGCTTGCGAGATACTAGTTTTGCTGGCTGGACTTTTTCCTAACCCAACATTGGAGACATCAGTTCTGTCCATATGCTTAACAATCTCTACATTACATTTCACCATACCCTACGGGTTTGGGGCTGCTGCCAGCACTAGAGTTTCGAATGAATTAGGAGCAGGGAATCCAGAAGCAGTTCGTGTGGCTATTTCTGCATCGATGTTGCTTGCAGTTGCAGAGGGTCTCATTGTAAGTGCAACACTATTCGGATGCAGACATTTCTTGGGTTATGCCTTTAGCAACGAAAGTGTAGTTGTTCATTATGCGGCTCTGTTAACCCCTCTGCTATGTCTCTCCATTTTTACCGATAGCTTACAAGCGCTTCTTTCAGGGGTTGCTAGAGGAAGTGGGTGGCAACATCTTGGAGCATATGTGAATCTTGGAGCATTTTATTTGGTAGGAGTTCCTGTAGGTTGCGTACTTGGCTTTGTTGCACATTTGAGAGCAAGGGGCCTTTGGATCGGAATAGTTGCAGGCTCCATTGTCCAATCCATTTTTCTTTCCCTCATTACTGCTCTTACCAACTGGAATAAACAGGCAACAGTGGCAAGAGAGAGAATATTTGATGCCAAGCCACAAGACGAAAATGGATCAAATCACATGACGAGTGCTTAA 1428 0.4447 MWDLDFSQYTGFFPIEEVKKVGRIAAPMVVASVLQYLMQVVSMVMVGHLGQLSLSSVAIATSLTNVSGFSVLSGMAGGLETLCGQAFGAEEYEKVGLYTYTAIICLTLLSFPITLLWVFLDKILVLLGQDPSISHEARKYAIWLIPALFGSAILKPLTRFLQTQSLVSPMMLSSALVLCLHVAMCWSLVFKLGLGHVGAAIAFSVCVWLNVILLFSFVRYSSACHRTRLPFSTNAFLRIGDFFRFAVPAAVMVCLKWWACEILVLLAGLFPNPTLETSVLSICLTISTLHFTIPYGFGAAASTRVSNELGAGNPEAVRVAISASMLLAVAEGLIVSATLFGCRHFLGYAFSNESVVVHYAALLTPLLCLSIFTDSLQALLSGVARGSGWQHLGAYVNLGAFYLVGVPVGCVLGFVAHLRARGLWIGIVAGSIVQSIFLSLITALTNWNKQATVARERIFDAKPQDENGSNHMTSA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02475 475 CDD MATE_eukaryotic 17 451 IPR045069 GO:0042910|GO:1990961
Cca07g02475 475 PANTHER PROTEIN DETOXIFICATION 15 454 - -
Cca07g02475 475 TIGRFAM matE: MATE efflux family protein 27 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g02475 475 PANTHER MULTIDRUG RESISTANCE PROTEIN 15 454 - -
Cca07g02475 475 Pfam MatE 248 409 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca07g02475 475 Pfam MatE 27 186 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02475 Cca-Chr7 53524002 53527950 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02475 07 53524002 53527950 Cca08g00283 08 4071301 4076285 ECH
Cca07g02475 07 53524002 53527950 Cca09g02800 09 53610664 53614119 ECH
Cca07g02475 07 53524002 53527950 Cca07g02475 07 53524002 53527950 ECH