LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g02357	ATGTCTGAAATGGTTTCTGCTCTTGCTCAAGTTATGGGAACCACCAATCGGAACCCACACATGCCACAATCAACTTATTTTCCTCTCTCAACTTCAGTGGTCAATGATCAGCCTCAACCTTACCCATCTCATCCTCCTCTAGATCAAAAAGAAGTGACAAAGAAACCACACTACAGAGGAGTGAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATACGTGATCCCAAAAAAGCAGCCAGAGTGTGGCTGGGAACCTTTGAAACAGCTGAGGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCCAAACTTAATTTCCCTGAAAGGGTTCATCAAGATGCAACTTTTCTTCAACAAGCTCCATCAAACAAAAACATCATTCCCTTCCAAGCAACTGGCTCTGTTTCTTCTCTTGATGCTGTAACCCCTCACCCATTGTCCACACAACATGACCACCAAGTTTTCCCTAATCTCTTCCAATATGCACGGATTCTTTCAAGTGATGATTCACAGTTCCCTTATTACACATCACATCTTTTCAATCACCAACAACAAGAACAACCACCTTTGAGTTCTCAATTCTCTACCACTTTATCATCCTCCTCATCTCCCTCATCCTACTTCTACAACCAGCAACAACAATATGATGAACAAGGACATGATCACTCAGGCCAGTAG	699	0.4363	MSEMVSALAQVMGTTNRNPHMPQSTYFPLSTSVVNDQPQPYPSHPPLDQKEVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHQDATFLQQAPSNKNIIPFQATGSVSSLDAVTPHPLSTQHDHQVFPNLFQYARILSSDDSQFPYYTSHLFNHQQQEQPPLSSQFSTTLSSSSSPSSYFYNQQQQYDEQGHDHSGQ	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g02357	232	PANTHER	DNA-BINDING DOMAIN	29	225	IPR044808	GO:0003700\|GO:0009873
	Cca07g02357	232	ProSiteProfiles	AP2/ERF domain profile.	57	114	IPR001471	GO:0003700\|GO:0006355
	Cca07g02357	232	MobiDBLite	consensus disorder prediction	189	232	-	-
	Cca07g02357	232	CDD	AP2	56	115	IPR001471	GO:0003700\|GO:0006355
	Cca07g02357	232	SUPERFAMILY	DNA-binding domain	57	115	IPR016177	GO:0003677
	Cca07g02357	232	MobiDBLite	consensus disorder prediction	35	60	-	-
	Cca07g02357	232	SMART	rav1_2	57	120	IPR001471	GO:0003700\|GO:0006355
	Cca07g02357	232	Gene3D	AP2/ERF domain	57	116	IPR036955	GO:0003700\|GO:0006355
	Cca07g02357	232	Pfam	AP2 domain	56	106	IPR001471	GO:0003700\|GO:0006355
	Cca07g02357	232	PANTHER	AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2	29	225	-	-
	Cca07g02357	232	PRINTS	Ethylene responsive element binding protein signature	58	69	IPR001471	GO:0003700\|GO:0006355
	Cca07g02357	232	PRINTS	Ethylene responsive element binding protein signature	80	96	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g02357	Cca-Chr7	52158938	52162730	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g02357	4	187	AP2-EREBP Transcription Factor Family	AT5G13330	48.691	1.31e-45	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Cca07g02357		AP2	5.2e-15	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca07g02357	07	52158938	52162730	Cca08g00236	08	3272304	3274236	ECH
	Cca07g02357	07	52158938	52162730	Cca09g02708	09	52755045	52756869	ECH
	Cca07g02357	07	52158938	52162730	Cca07g02357	07	52158938	52162730	ECH
	Cca07g02357	07	52158938	52162730	Cca03g00273	03	3997562	4000065	ECH
	Cca07g02357	07	52158938	52162730	Cca09g02350	09	48796705	48800011	ECH
	Cca07g02357	07	52158938	52162730	Cca07g00740	07	11436554	11439395	ECH
	Cca06g00332	06	9384301	9385746	Cca07g02357	07	52158938	52162730	ECH