Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02283 atgggacgaggtagggttcagctcaagcggatcgagaacaaaaccacccagcaagtcaccttctccaaacgcagatccggactcctcaagaaagcgcacgaaatctctgtgctatgcgatgctcaactcgctcttatcatcttctccTCCAAAGGAAAACTTTTCCACTATTCCTCCGAACGCAGCATGGAAGACGTCCTGGAACGTTACGAGAGATCTACACATACTGAACTTGTTGGAGCTAACAATGAATTACAGGAGAATTGGTCTTTCGAATATATCAAGCTCACCCATAAAGTTGAAGTCTTGGACAGAAACGTAAGGAATTTCTTGGGAGATGATCTGGATTCCTTGAGTATGAAAGAGCTTCAGAATTTGGAGCAGCAGCTTGACACATCTCTAAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCAGAACTGCATAAAAGGGTAAGATCATGTGTTTGTGTGTCATTAGTTTTTATTAAATATATTATGAAGGAGAAAGCCAAGACAGTGACTGAACGTCCACACAGCTGCCCTGAAACTCTAGGCCAAAATCCATCCACCCTTAACTTGTCTTCTCCACAGCAACTACCACCACAAAGACTGGTTCCTTCTCTATCTTTAAGTGGGACATTACAAGGAAGAGCTTCTTCGGTGGAAGAAACGGGTGACGTTCAAACAGTCCCAAGTAACACTTGTCTGATCCCACCATGGATGCTGCATATCTAA 750 0.3373 MGRGRVQLKRIENKTTQQVTFSKRRSGLLKKAHEISVLCDAQLALIIFSSKGKLFHYSSERSMEDVLERYERSTHTELVGANNELQENWSFEYIKLTHKVEVLDRNVRNFLGDDLDSLSMKELQNLEQQLDTSLKRIRTRKNQVMNQSISELHKRVRSCVCVSLVFIKYIMKEKAKTVTERPHSCPETLGQNPSTLNLSSPQQLPPQRLVPSLSLSGTLQGRASSVEETGDVQTVPSNTCLIPPWMLHI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02283 249 Pfam K-box region 85 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca07g02283 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 MobiDBLite consensus disorder prediction 184 204 - -
Cca07g02283 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 MobiDBLite consensus disorder prediction 180 204 - -
Cca07g02283 249 ProSiteProfiles K-box domain profile. 86 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca07g02283 249 PANTHER MADS BOX PROTEIN 1 216 - -
Cca07g02283 249 Coils Coil 120 143 - -
Cca07g02283 249 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 216 - -
Cca07g02283 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca07g02283 249 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Cca07g02283 249 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Cca07g02283 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02283 Cca-Chr7 51349164 51359559 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02283 1 220 MADS-box Gene Family AT1G26310 48.908 8.83e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca07g02283 K-box 6e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02283 07 51349164 51359559 Cca03g00686 03 12567539 12571832 ECH
Cca07g02283 07 51349164 51359559 Cca11g02044 11 46007708 46015437 ECH
Cca07g02283 07 51349164 51359559 Cca07g02283 07 51349164 51359559 ECH
Cca07g02283 07 51349164 51359559 Cca09g00342 09 8045052 8060440 ECH
Cca06g00519 06 15651090 15655890 Cca07g02283 07 51349164 51359559 ECH
Cca07g02283 07 51349164 51359559 Cca09g00342 09 8045052 8060440 PCT