Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02169 ATGTCGGAGGCTAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGGTGCCGGAGATTCCCGCCGAAGCTCCGGCCCTGTCTTCCGGCGATGTTGTCGATGACAGTGCTGAACAGAGTCACGCTTCTTCCACCAACTCTTCCAGGGAGTCTCGTACCAACAGAGATGCACCAGAGGTAGATTTGGATAAGGACACATTGGGAGAAAAACCAACTGATAATAAGAAGGAAGATGGAGCCCCCACCCAATCATCAGAAGAGGTCACTAATCCAGATGCTGCCTCTGGAACCTGTGAGGAATCCATTACCCTGTCGACCGAGAGGGAGGCTACTCCATTGAAAACTTCAAAGACTGAAGAGGAGCAGGGTGAGACAAGTAATTCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTACCATGTCCTCGCTGTAATAGCATGGACACTAAGTTCTGCTACTACAATAACTACAACGTCAACCAACCCCGCCATTTCTGCAAGAACTGCCAGAGATACTGGACTGCTGGGGGGACCATGAGGAACGTTCCTGTAGGAGCTGGTCGCAGAAAGAACAAGAATTCTGCTTCTCACTATCGCCAGATAACTGTTTCTGAAGCTGCAATCCAGAATCCTCGAACCGACTTGCCAAATGGGGCATACCATCCTTCCTTGAAATGCAATGGTACAGTCCTTACATTTGGAACTGATACACCCTTGTGTGAATCAATGGCATCTGTTTTGAACCTTGCTGATAAAACCGTGCACAATTACACAAGAAATGGATTTCATAAACCTGAAGAACTAAGAATTTCTGTTCCCCTTGCCAGTGGAGAAAAAGGGGATGATCAATCCAATAAATCCTCGATCACCTCCACAAAGTCAATGGAAGGAACAAGCACCAATGGACCCCAAGAACAAGCTATGCAGAATATTCAAAACTTCCCCCAAGTTCCCTTCTTTTCTGGAACCCCTTGGCCTATCCCATGGAATCCAGTGCAGTGGAGCTCACCAGTACCACCACCTGCTTTTTGTCCCCCAGGATTTACTGTGCCATTCTATCCTGCAGCAGCTTATTGGGGCTGTGCTGTGCCAGGCGCGTGGAACATCCCATGGCTAGCGCAACCGTCATCACCAAAAGTTGCAAACCCAAACTCTGGCCCTAACTCCCCAACCTTGGGTAAACATTCAAGGGAAGACAACATTCTCAAACCAAATGAGTCAGGTGGCGAGGATGAGCACAGCAAAGAAAACAACAAAGAAAAGTCCTTGTGGGTTCCAAAAACTTTGAGGATTGATGACTCGGGAGAAGCAGCAAAAAGCTCTTTATGGACAACACTTGGGATTAAAAATGATAAGGCTGACTCAATTCCTGGGGGAGGACTCTTCAAAGCCTTCCCTTCAAAGAATGATGAGAAAAATCATTCAGTGCAGGCCTCACCGGTGTTGCAGGCCAATCCAGCGGCGTTGTCTAGGTCCCTTAACTTTCATGAGACCTCATAA 1506 0.4768 MSEAKDPAIKLFGKTIPVPEIPAEAPALSSGDVVDDSAEQSHASSTNSSRESRTNRDAPEVDLDKDTLGEKPTDNKKEDGAPTQSSEEVTNPDAASGTCEESITLSTEREATPLKTSKTEEEQGETSNSQDKNLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSASHYRQITVSEAAIQNPRTDLPNGAYHPSLKCNGTVLTFGTDTPLCESMASVLNLADKTVHNYTRNGFHKPEELRISVPLASGEKGDDQSNKSSITSTKSMEGTSTNGPQEQAMQNIQNFPQVPFFSGTPWPIPWNPVQWSSPVPPPAFCPPGFTVPFYPAAAYWGCAVPGAWNIPWLAQPSSPKVANPNSGPNSPTLGKHSREDNILKPNESGGEDEHSKENNKEKSLWVPKTLRIDDSGEAAKSSLWTTLGIKNDKADSIPGGGLFKAFPSKNDEKNHSVQASPVLQANPAALSRSLNFHETS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02169 501 MobiDBLite consensus disorder prediction 276 306 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 451 485 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 84 112 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 34 52 - -
Cca07g02169 501 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Cca07g02169 501 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Cca07g02169 501 MobiDBLite consensus disorder prediction 1 141 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 379 423 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 379 397 - -
Cca07g02169 501 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Cca07g02169 501 MobiDBLite consensus disorder prediction 53 83 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 113 139 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 280 306 - -
Cca07g02169 501 MobiDBLite consensus disorder prediction 398 423 - -
Cca07g02169 501 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 500 - -
Cca07g02169 501 PANTHER CYCLIC DOF FACTOR 2 1 500 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02169 Cca-Chr7 49860971 49864544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02169 6 501 C2C2-Dof Transcription Factor Family AT5G39660 46.169 1.40e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca07g02169 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02169 - - gmx:100788247 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02169 07 49860971 49864544 Cca03g00590 03 10242919 10246292 ECH
Cca07g02169 07 49860971 49864544 Cca11g01967 11 45063844 45066553 ECH
Cca07g02169 07 49860971 49864544 Cca07g02169 07 49860971 49864544 ECH
Cca06g00639 06 18072197 18076158 Cca07g02169 07 49860971 49864544 ECH