Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01366 ATGGTTTATACTTCCATCCCAGCATATATTGATCCAGCCAACTGGCAGCAACAGCAACCAAATCACCAGCAGCCAGGCAACAACACTACTGCCAGTTCCCACCTTATTCTTccaccaccaatacaaccacctccacctccgccaTCGCAGCCTCATGGACTCGGCGGTAATAGTACTACCGCCGGGTCCATCAGGCCAGGTTCGATGGCGGATAGGGCTAGGATGGCCAACATACCCATGCAAGAAGCTCCACAAAAGTGTCCAAGATGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCCCGCCACTTCTGCAAGGCCTGTAGAAGGTACTGGACACGCGGTGGCGCCTTGAGGAACGTCCCCGTCGGCGGTGGCTGCCGGAGGAACAAGAGAAGCAGAGGCACCTCCGGCAGCAACACCAGGTCGCCGGCAAACTCCGATCGCCAAACTGCGAGCGCCGGTTCGGCATCCACAACTAGTGGCTCCTCTTCCGCAGACATGGTGGCCGGCCTCGGCGGCACCGGAGTGCCGTCGTCTCTTAGATTCATGGCTCCATTGCATCAACTCAGTGATCACCACCTTGGGGGTGGTGGGGGTGGAGAAATAGGGCTAAACTATGGCTTGAACTATGGCGCAATTTCGGGTCCAGTGGGAGGAATAGGAGACTTGAATTTCCACATAGGAAGTGCTTTGAGTGGAGGTGGATCCATGTTGTCAGGTTTGGACCAATGGAGGGTGCCACAAACTCACCAGTTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCACATGGATTGTACCCTTTTGAAGGTGGTAGTGGCAGTGATGGCTATGGTGGCACTCCCATTAAGGTTTCAACTTCTGGGGTTATGTCTCAACTTGCTTCTGTGAAAATGGAAGAGAATCATCATCATCATGAGCTTGGTTTGCCTAGACAGTTCTTGGGATCAGTCAATAATAATCCTAATGCAAATGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTTCTGCTTGGACCGATCTTTCTGCTTTTAGCTCTTCTTCCACTACTAGTAACGCACTATAG 1092 0.5018 MVYTSIPAYIDPANWQQQQPNHQQPGNNTTASSHLILPPPIQPPPPPPSQPHGLGGNSTTAGSIRPGSMADRARMANIPMQEAPQKCPRCESTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKRSRGTSGSNTRSPANSDRQTASAGSASTTSGSSSADMVAGLGGTGVPSSLRFMAPLHQLSDHHLGGGGGGEIGLNYGLNYGAISGPVGGIGDLNFHIGSALSGGGSMLSGLDQWRVPQTHQFPFLSGLEASSSHGLYPFEGGSGSDGYGGTPIKVSTSGVMSQLASVKMEENHHHHELGLPRQFLGSVNNNPNANEQYWSGGGGATSAWTDLSAFSSSSTTSNAL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01366 363 MobiDBLite consensus disorder prediction 13 36 - -
Cca07g01366 363 MobiDBLite consensus disorder prediction 139 175 - -
Cca07g01366 363 Pfam Dof domain, zinc finger 84 139 IPR003851 GO:0003677|GO:0006355
Cca07g01366 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 359 IPR045174 GO:0003700|GO:0006355
Cca07g01366 363 MobiDBLite consensus disorder prediction 37 52 - -
Cca07g01366 363 ProSiteProfiles Zinc finger Dof-type profile. 85 139 IPR003851 GO:0003677|GO:0006355
Cca07g01366 363 MobiDBLite consensus disorder prediction 129 178 - -
Cca07g01366 363 ProSitePatterns Zinc finger Dof-type signature. 87 123 IPR003851 GO:0003677|GO:0006355
Cca07g01366 363 MobiDBLite consensus disorder prediction 13 67 - -
Cca07g01366 363 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01366 Cca-Chr7 35751231 35753008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01366 1 356 C2C2-Dof Transcription Factor Family AT2G37590 41.711 2.73e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca07g01366 zf-Dof 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01366 - - gmx:100796820 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01366 07 35751231 35753008 Cca07g01366 07 35751231 35753008 ECH