Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00740 ATGAGTACTTCTGGATGGAGAGGTAACAAGCAAGGAATTCTAGATCTGCTTTATACGAAGGCATATATAGCTCCTAGGCATGGAAAGAGACCTCTCCCTTGTGATCATGCATCAAGGGAGAAAAGGGAAGAAGATTTCAATTTTCCTGTTCACACATCATCTAAGAAGCAAGAGGAAGAAGCTTCTCTATTCCCCTATATACCTCCAATCAACACTGGTGATGATAGCACCATCTCTACACCAATACCACAATATGGTCAACTAGCCTTGATTGAGACGCACGACCCATCCCAGCAGCCTTTAAATCAAGGCAATGCAAGAAAAAGACACTATAGAGGAGTTAGGCAGAGACCATGGGGGAAATGGGCTGCCGAAATCCGCGACCCTAAAAAGGCTGCTAGAGTCTGGCTTGGCACGTTTGACACGGCAGAGGCTGCAGCCGCTGCTTACGATGCTGCTGCCTTGAAGTTCAAAGGCTCCAAAGCCAAGCTCAATTTCCCGGAACATGTTCTTGTTCCTCCCATGCCATCATCACATTCTAGTAACATTAATCACATTGACAATAATGTTAATAACTATGCTACTTCAGTATCATCATTGTGGTCACCACCACCATTATCGTTGTCATCATCAGAAGGGTTTCCAAATCTGATGCAGTATGCACAGCTTCTGTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCGGGTCTTCAGCATCAGCATCGTACTAATGAGGCTTTTCATGATCCGGGttcttctgctttgttctcgtcatcttcttcttcCACTGTGGCTGTGTCTGATCAACAGCAGATTGGAGATGGCACGAGTGTGGCGACTAAGGGGGGAGAGTGTTGTGATTCATGGGGTTTTAGAGGGAGTGGTTTTCATGATGATGACAAGAATTGA 915 0.4393 MSTSGWRGNKQGILDLLYTKAYIAPRHGKRPLPCDHASREKREEDFNFPVHTSSKKQEEEASLFPYIPPINTGDDSTISTPIPQYGQLALIETHDPSQQPLNQGNARKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLVPPMPSSHSSNINHIDNNVNNYATSVSSLWSPPPLSLSSSEGFPNLMQYAQLLWSRDDDDLQRVASGLQHQHRTNEAFHDPGSSALFSSSSSSTVAVSDQQQIGDGTSVATKGGECCDSWGFRGSGFHDDDKN 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00740 304 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 88 286 - -
Cca07g00740 304 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 Gene3D AP2/ERF domain 109 169 IPR036955 GO:0003700|GO:0006355
Cca07g00740 304 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 CDD AP2 110 169 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 PANTHER DNA-BINDING DOMAIN 88 286 IPR044808 GO:0003700|GO:0009873
Cca07g00740 304 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Cca07g00740 304 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00740 Cca-Chr7 11436554 11439395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00740 102 239 AP2-EREBP Transcription Factor Family AT5G13330 53.846 3.81e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca07g00740 AP2 1.8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00740 07 11436554 11439395 Cca03g00273 03 3997562 4000065 ECH
Cca07g00740 07 11436554 11439395 Cca09g02350 09 48796705 48800011 ECH
Cca07g00740 07 11436554 11439395 Cca07g00740 07 11436554 11439395 ECH
Cca07g02357 07 52158938 52162730 Cca07g00740 07 11436554 11439395 ECH
Cca07g00740 07 11436554 11439395 Cca08g00860 08 19216532 19219058 PCT
Cca08g01038 08 26302397 26305038 Cca07g00740 07 11436554 11439395 PCT