Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00586 atGTCTCAGACAGATAAGGATCCGGGTATCAGGCTATTTGGCAGGAagattccggtgccggaatgtcagattccggccaGCTTTGGACCCATGGATGCTTGCAGCAGCATAAAGAAAACAGAAGCGGAAATACCAAGTGATTGTGAAGAAAACTCTGAGCAACAAGAAAATTCTTCTGATTTAAGGGATAGTAAGGTGCAAGGAAATGAGCCAAAAGTAAATCCTAAGCCTGTGGAAGATAACATGGAGTCTGGTATCTCAGATCAAGACAAAGTCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACCAAGTTTTGTTATTTTAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGCCAAAGATATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATAGGAGCTGGCAGAAGGAAGAACAAGCACCTAGCCTCGCAATACCGACACATCATAGTAACCTCTGATGGAATTCCAACCTCCAGGCTAGAAACCACAGACTCATCTGGTCACCAACAGCAGCATATCACAAGCCTTGAATCCTCAGTTCCATTCATATCTTCAACAGATAACAGCACTGTGTTGAAATTTGGTCCAGATACCCCTCTTTGTGAGTCCATGGATTCGATGCTTAACCTTAGGGACCACAAAAGATGTGTTGATGCAAGTTCTCTCACTTGTGTAGAGTATGGAGGGGAGCCATCTTTGTGTGGATCTTCTGTGACAAATAATGGTACTCAAGGAAATGATGTATCAGAACATAATACATCAAATTGGTTACAATGCTACCCTGTTCCTCCTTGGGTGTTGCCTTATCCAGGTTGGAATAATGTGAATTCAATGGAAGCAGTTCATCAATCTTCAGCACCAATGTGTAATAGTCCATACAACACTGGTCCTGCATCAATGCAATGGTGTCCCACACCAATGGTTGCAATTCCTGGCATGTGTCCACCAAGCATTCCTTTGCAACTTGTGCCACCATCATACTGGGGTGGAACACCACTTTGGAATGGTGGAACTGGGGCTGTATCGATAGGATCCAATGCTTGCCTTTCGCCGTCTTCCTCCACTAGTAACAGTTGCTGCTCTGGCAATGTCTCCCCGACCCTTGGAAAGCACACTAGAGATAAAGATAATGCTTTTGCTGATGAAGAGAAGTCAGAGAAGTGTGTTTTGGTTCCAAAGACCATTAGAATTGATGCCACAAATGATGCCTCAAAAAGTCCTATAAGGGCTGCATTGGCTATCAAGCCTGACCAACTGCAATCTGTATCAAAAGGTGATGTTTTGAAAAAAAATGAACCAAAAGAAGGCAATGATCGTGTATCGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCAGCAATTTCTCGTGCTCATGCATTTCAGGAGAGCATGTGA 1437 0.4245 MSQTDKDPGIRLFGRKIPVPECQIPASFGPMDACSSIKKTEAEIPSDCEENSEQQENSSDLRDSKVQGNEPKVNPKPVEDNMESGISDQDKVLKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYRHIIVTSDGIPTSRLETTDSSGHQQQHITSLESSVPFISSTDNSTVLKFGPDTPLCESMDSMLNLRDHKRCVDASSLTCVEYGGEPSLCGSSVTNNGTQGNDVSEHNTSNWLQCYPVPPWVLPYPGWNNVNSMEAVHQSSAPMCNSPYNTGPASMQWCPTPMVAIPGMCPPSIPLQLVPPSYWGGTPLWNGGTGAVSIGSNACLSPSSSTSNSCCSGNVSPTLGKHTRDKDNAFADEEKSEKCVLVPKTIRIDATNDASKSPIRAALAIKPDQLQSVSKGDVLKKNEPKEGNDRVSGASQILEANPAAISRAHAFQESM 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00586 478 ProSitePatterns Zinc finger Dof-type signature. 102 138 IPR003851 GO:0003677|GO:0006355
Cca07g00586 478 Pfam Dof domain, zinc finger 97 154 IPR003851 GO:0003677|GO:0006355
Cca07g00586 478 PANTHER CYCLIC DOF FACTOR 2 1 477 IPR045174 GO:0003700|GO:0006355
Cca07g00586 478 MobiDBLite consensus disorder prediction 55 69 - -
Cca07g00586 478 MobiDBLite consensus disorder prediction 42 92 - -
Cca07g00586 478 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 477 - -
Cca07g00586 478 ProSiteProfiles Zinc finger Dof-type profile. 100 154 IPR003851 GO:0003677|GO:0006355
Cca07g00586 478 MobiDBLite consensus disorder prediction 436 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00586 Cca-Chr7 8443464 8446895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00586 7 477 C2C2-Dof Transcription Factor Family AT5G39660 35.436 2.15e-67 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca07g00586 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00586 - - gmx:100813787 827.394