Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00484 ATGGATCGGATAAAAGGCCCATGGAGTCCCCAAGAGGACGAAGCTTTGAGGAGGCTGGTCCACACTTACGGGCCCAGAAGCTGGTCCCTTATAAGCAAAGCAATCCCGGGCCGCTCTGGGAAGTCCTGCCGGTTGCGGTGGTGCAACCAGCTCTCTCCGGAGGTGGAGCGCCGTCCTTTCACAGCGGAGGAAGACGAAATGATCGTGAAGGCGCAGGCCAGGTTCGGGAACAGGTGGGCCACCATCGCTCGCTTCCTCAATGGCCGCACTGACAACGCTATAAAAAACCATTGGAATTCCACTCTTAAAAGGAAATGCTCCCAATCCCAAGCTTTCTCCAACTCCCACCCACACCCTCTCAAAAGACACGCCACCACCGCTTCGGCTTCCGCTTCCGCTTCCGCTACTCCGTCTGGATCCGATTTCAGCGCCCCGGCCCAACTAGCGGAAACTGCGTCAACTGATCCCGCCACGTTACTCACCCTGTCTCTACCTGGATCCGATTCGTGCGAGAAGCAGTTGTTCAGTGCAAAGTTATTGAACGTGATGCAAGAGATGATACGAGTGGAAGTGAGGAGTTACATGTCTGGACTGGAACGAATGCAAACCCAAGCCATTCAAAACGCCCTTGTCGATAAATTGTTgaatgcgaatcgaattgacaaatgtgaattgcagaatggaaAATGA 690 0.5116 MDRIKGPWSPQEDEALRRLVHTYGPRSWSLISKAIPGRSGKSCRLRWCNQLSPEVERRPFTAEEDEMIVKAQARFGNRWATIARFLNGRTDNAIKNHWNSTLKRKCSQSQAFSNSHPHPLKRHATTASASASASATPSGSDFSAPAQLAETASTDPATLLTLSLPGSDSCEKQLFSAKLLNVMQEMIRVEVRSYMSGLERMQTQAIQNALVDKLLNANRIDKCELQNGK 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00484 229 Gene3D - 4 56 - -
Cca07g00484 229 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Cca07g00484 229 Pfam Myb-like DNA-binding domain 8 66 - -
Cca07g00484 229 CDD SANT 7 49 IPR001005 -
Cca07g00484 229 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Cca07g00484 229 SMART sant 4 53 IPR001005 -
Cca07g00484 229 SMART sant 56 104 IPR001005 -
Cca07g00484 229 MobiDBLite consensus disorder prediction 108 144 - -
Cca07g00484 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Cca07g00484 229 Gene3D - 58 130 - -
Cca07g00484 229 CDD SANT 59 102 IPR001005 -
Cca07g00484 229 PANTHER MYB PROTEIN-RELATED 1 168 - -
Cca07g00484 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Cca07g00484 229 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 168 - -
Cca07g00484 229 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00484 Cca-Chr7 6606219 6607176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00484 1 200 MYB Transcription Factor Family AT4G37260 47.037 1.31e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g00484 Myb_DNA-bind_6 5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00484 07 6606219 6607176 Cca07g00484 07 6606219 6607176 ECH
Cca05g00128 05 2940948 2942379 Cca07g00484 07 6606219 6607176 PCT