Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00476 ATGGGTAATAACAGATATGCGACTGCCACGGCCACGATTCTGATGGTGTTGGCAGTGTCATCAGCATTGGAGATGTCGATTATCTCGTACGACAGAAGCCACGCGGGGAAGTCGGGGTGGAGGAGCAATGAGATTGAGGAGGTAATGAGTGTATACGAGAAGTGGCTTGTGAAGCATGGGAAGGTGTATAACTCCCGCAGCGAGAACAAAAAGAGGTTTGAGATCTTCAAAGACAACCTTAAGTTTATCGACCAGCACAATGCTGAGAAACGAACGTACAAGGTTGGACCGAACCGGTTCGCTGATCTTAGCAACGAGGAGTACCGGTCCAAGTACCTGGGAACCAAGATGGACGCCACCAGAGTGATGGGCAAGGCAAGTAAGCGTTACGCTCCGCGCGTGGGTGACAACTTGCCGGAATCTGTTGATTGGAGGAAAGAAGGTGCCGTCGTCGGAGTCAAAGACCAAAAAGAATGCGAGGGTTGCTGGGCATTCTCTGCAATTGCAGCAGTGGAAGGGATTAACAAGATAGTAACAAGCAATCTAACTACACTGTCAGAGCAAGAACTGCTAGATTGTGACAGAACAGTCAATGCAGGATGTAGTGGCGGACTTGTGGATTACGCGTTTGAGTTCATTATCAACAATGGTGGCATCGACACAGAAGAGGATTACCCTTTTCAAGGTGCTGATGGTATATGTGATCAACACAAGAAAAATGCTAGAGTTGTTACAATTGATGGTTATGAAAGTGTTCCTGCCTATGATGAATTAGCCTTGAAGAAAGCAGTAGCAAATCAGCCAGTGAGTGTTGCCATTGAAGCAGGTGGCAAGGAGTTTCAATTATATGAATCAGGTATATTCACAGGATCATGTGGGACAATAATAGATCATGGTGTTGCAGCTGTTGGGTATGGAACAGAAAATGGAATAGACTATTGGATCGTCAAGAATTCTTGGGGTACGGGTTGGGGAGAGGCAGGCTATGTAAGAATAGAACGTAATATAGCAGGAGACACTGCTGGAAAATGTGGAATTGCAATTTTATCATTCTATCCCATAAAGAGGGGCCAAAATCCAATAGCTAGTTCAGGGTTTGGAGGATTTTAA 1110 0.4559 MGNNRYATATATILMVLAVSSALEMSIISYDRSHAGKSGWRSNEIEEVMSVYEKWLVKHGKVYNSRSENKKRFEIFKDNLKFIDQHNAEKRTYKVGPNRFADLSNEEYRSKYLGTKMDATRVMGKASKRYAPRVGDNLPESVDWRKEGAVVGVKDQKECEGCWAFSAIAAVEGINKIVTSNLTTLSEQELLDCDRTVNAGCSGGLVDYAFEFIINNGGIDTEEDYPFQGADGICDQHKKNARVVTIDGYESVPAYDELALKKAVANQPVSVAIEAGGKEFQLYESGIFTGSCGTIIDHGVAAVGYGTENGIDYWIVKNSWGTGWGEAGYVRIERNIAGDTAGKCGIAILSFYPIKRGQNPIASSGFGGF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00476 369 Pfam Papain family cysteine protease 138 354 IPR000668 GO:0006508|GO:0008234
Cca07g00476 369 Pfam Cathepsin propeptide inhibitor domain (I29) 52 108 IPR013201 -
Cca07g00476 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Cca07g00476 369 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Cca07g00476 369 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Cca07g00476 369 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Cca07g00476 369 PANTHER CYSTEINE PROTEASE 33 360 - -
Cca07g00476 369 CDD Peptidase_C1A 139 353 IPR039417 -
Cca07g00476 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Cca07g00476 369 Gene3D Cysteine proteinases 37 356 - -
Cca07g00476 369 SMART pept_c1 138 354 IPR000668 GO:0006508|GO:0008234
Cca07g00476 369 SUPERFAMILY Cysteine proteinases 47 354 IPR038765 -
Cca07g00476 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Cca07g00476 369 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 33 360 - -
Cca07g00476 369 SMART Inhibitor_I29_2 52 108 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00476 Cca-Chr7 6450933 6455431 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00476 07 6450933 6455431 Cca07g00476 07 6450933 6455431 ECH
Cca05g00142 05 3283332 3287345 Cca07g00476 07 6450933 6455431 PCT