Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00454 ATGCAAGGGCAGAGAGGTACAATTGGTTCAATGCCTGAAACTTTAGAATTTGATTGTGGATCTGCATCAAGTAGTTCTACCATGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTGATATGAACTCATCTTATGTTAATTCTATTAATCATGAATGGCAAAACTTGAGTGGGTGGAGCTTAGGCGAGCCAAGTTCCAGTAATACCCCAAATGAGATTAACAATAATGAGCAGAAAAGAGAACTTGGATGGTCATCAACCATTTCTACCGGTGCATTGGCTGGTCCAAGACTAGAAGAAAGACGCCATGAACCAAGCAATGCTCTTTCACTAGACAATGTCAATACAGGTCCAATGTACACACGTAGCCCCAATTCTCGTTTGATATCCCAGAATCTCAACTTAAATGCAGGCTTAGAAGACAATGGAAGTGATATTGGTCAACATCTGGAGCTTCCTAACTTACACAAGTCTAGTGGGTCAGCAAATGAGTGTATGCCATCTAATGTTGGATCTGGTTCTTTTCTGCTACCTTCTGGAAATAATGGCTTCTTGGTAGAAGAAGATACTAATGGTAGGCCAGATTGTTCCCTTGATACTCGACGTGTCTCTTGTAAAAGAAAGGCTGTTGAAGCAAATACCGGACAATCTTCAGATGGTGGAAGTTCTAGCTACAGTCAGCATACAGATGGAAGCGCTTGGAACACCATTCCTACCCAGGATAATGCTGGAAGCAGTTCAAGAAGACCCATTTCCTCAGAACAGGTCAACGCAAGACTTGGCCTGGGTATGGGGGATGAAGCATCTGCAAACATTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCATAGGAATTTCCGTTTGAGGTTAAATCCTTCAAACCAGCAAAATTCTGTTCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATTCTGGTGTTTCTTCATCCTCTCAAATACCACAAAGGTTTCATGCTGTTGATAATTCTCTGAACTTGAGGCCAGCACCTCCAATAGATAATGTGGTTCCTCAAAGCCAGCCACTTGTAATTCATGTTCCTGCTTTGCCTAGGAATAGGCAATCATTTAGATGGAGTGGTGGTTCTAGTTCAAGAAACATCCATTCATCAAACTCAATAATATGTGCAGACCGGGATCAGGAGGATGCAAGCTCAAGAAGGATGTCTAGAAATATCTTAGAACATCCAGTCTTTGTACCTGCAACCGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAATTAGTGAAAATTTAAGTATTCCAGGAAATGTTGCTTCTTCATCACGGACTGGATCAAATCCAGTTAACAATCCCTCATCTGCCTCTGCTTGGGCTTCTCGTCCTAATCCTCAACAGAATCAACGTAGGATATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATGCTATTGGAAGTCCAAGCAATAATTATTCTTCCTTGCGCCCTGGTCTTTCTACATCTGAACCAAGGGTGTTATCTTCTGGGAGTGGGGCAAACCCAAGATCATCTTCATGGATGGAGAGACAAGGAGATAGTGAATTTGGAATTCCGTATTCACTACGTACTTTGGCTGTTGCAAGTGAAGGAAGTAATAGACTTGTATCAGAGCTCCGCAATGTTTTAGGCCTTATGCGTAGAGGTGGTGGGAATGTGCGATTTGAGGATGTTGTGATCCTTGATCATCAATCGTTTCTTTCTGGAATAGCGGATGTTCATGACCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTGTTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACCGGATTGAGTGAGGAAACCGTATTGAAGCACTTGAAACAGAAAAAGCACTCGGTTGAAAAAGGATCTCAGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTATGGTGATGGAGATGATATTGGAACACTTGATTGTGGCCATGATTTCCATAGCAAGTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCCATTTGTAAGACAACGGGCTTGGCAACATGA 2130 0.4225 MQGQRGTIGSMPETLEFDCGSASSSSTMDQQICWNNVNPAENQIPDYILSPGDMNSSYVNSINHEWQNLSGWSLGEPSSSNTPNEINNNEQKRELGWSSTISTGALAGPRLEERRHEPSNALSLDNVNTGPMYTRSPNSRLISQNLNLNAGLEDNGSDIGQHLELPNLHKSSGSANECMPSNVGSGSFLLPSGNNGFLVEEDTNGRPDCSLDTRRVSCKRKAVEANTGQSSDGGSSSYSQHTDGSAWNTIPTQDNAGSSSRRPISSEQVNARLGLGMGDEASANIPDSNIAGSSESFHRNFRLRLNPSNQQNSVPPTAFSTGSMIRHSGVSSSSQIPQRFHAVDNSLNLRPAPPIDNVVPQSQPLVIHVPALPRNRQSFRWSGGSSSRNIHSSNSIICADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSISENLSIPGNVASSSRTGSNPVNNPSSASAWASRPNPQQNQRRISEYVRRSLFSPGSDAIGSPSNNYSSLRPGLSTSEPRVLSSGSGANPRSSSWMERQGDSEFGIPYSLRTLAVASEGSNRLVSELRNVLGLMRRGGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETVLKHLKQKKHSVEKGSQIDAEPCCVCQEDYGDGDDIGTLDCGHDFHSKCIKQWLMHKNLCPICKTTGLAT 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00454 709 MobiDBLite consensus disorder prediction 223 265 - -
Cca07g00454 709 MobiDBLite consensus disorder prediction 73 105 - -
Cca07g00454 709 MobiDBLite consensus disorder prediction 121 138 - -
Cca07g00454 709 MobiDBLite consensus disorder prediction 498 539 - -
Cca07g00454 709 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 708 IPR045191 GO:0061630
Cca07g00454 709 MobiDBLite consensus disorder prediction 222 265 - -
Cca07g00454 709 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 706 IPR013083 -
Cca07g00454 709 MobiDBLite consensus disorder prediction 496 539 - -
Cca07g00454 709 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 708 - -
Cca07g00454 709 CDD RING-H2_TTC3 661 703 - -
Cca07g00454 709 Pfam Ring finger domain 662 703 IPR001841 -
Cca07g00454 709 MobiDBLite consensus disorder prediction 438 483 - -
Cca07g00454 709 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g00454 709 SMART ring_2 662 702 IPR001841 -
Cca07g00454 709 SUPERFAMILY RING/U-box 650 705 - -
Cca07g00454 709 MobiDBLite consensus disorder prediction 73 138 - -
Cca07g00454 709 ProSiteProfiles Zinc finger RING-type profile. 662 703 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00454 Cca-Chr7 6067547 6073607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00454 1 709 C3H Transcription Factor Family AT2G15530 31.963 9.13e-72 245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00454 07 6067547 6073607 Cca07g00454 07 6067547 6073607 ECH
Cca05g00160 05 3596754 3603198 Cca07g00454 07 6067547 6073607 PCT