Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00442 ATGGAGGATGTTGAAGACAAGATACCCCCTGTCTCCTCTTCAAAAGTTGCTGGAGCGACACCACTAGCAGAACATGTTGGAGACAAGCTACCATCTGAATCTTCTTCAAAAATTGCCGTAGAGGCACCCCTAGCAGAACATGTTGGAGACAAGCTACCATCTGAATCTTCTCCAAAAATTGCCGAGGAGACACCCCTGGCAGAACATGTTGAAGACAAGCTACCATCTGAATTTTCTCCAAAAATTGCTGAAGTGACACCACTGGCAGAACATGTTGGAGACAAGCTACCGTTGGAATCTTCTTCAGAAATTGTTAAAGCGACGCCACTAACAGAACATGCGGGAGATGACCAACCATCTGCTTACTCTTCAAAAATTGATGAAGAGCCACCACTGGCAGAACATGTGATAAACAACTATGAAGCCTCTTCTAAAATTGCTGAAAATTTAACCCTGGCAGAACATGTTATCGACACGCTACCTTCTGAATCCACTACAAAAATTGCTGAAGAGATGCCATCGGCAGAACCCCCTGAAGAAAATACTCAAGTGATAAACCCACCTGACAATCAATCTTCCACTGAAGCTCCAACAGTCCCACTTAGTAATGGAAAAATGGAGTCTGACACTCATTTGCCAGTGAATGAATTCTCTGAATTATCAGTTTTGTCAAATGCTTCCAATGATCTAACTATACTACAAGATGAATGTGTTTCTGTAGTTAATTCAGTTTCAAACCCAGATACTGCAGTTGATGTAACAGAGAAAAGCCAGCAGATAACTTCAGTTGAAGATTCTGAACCAGGTTCTGTAGAAAATGCCTCTGACAGGCATGAATTGCAGGATGATGTTTCCAATGTCACTGCTGACAGTGATGCTGATAATGAGATTAGACTCTCAGCTTCTTCTTCTGAAACGAAAGATTTGCCAAATGATCACGATGGCTCACTCCCCCGTGGCAAGATATTTGATGCAAAAAAACGCCTTATAGATACTGCACCTCCTTTTGAATCCGTGAAGGAAGCTGTTTCCAAGTTTGGAGGCATTGTGGATTGGAAGGCTCATAAGATCCAGACTGTGGAGAGACGCAATCATGTAGAAATAGAACTTGAAAAGGTGCAGGAGGAGATTCCAGAGTACCAAAAACAAGCAGAGGCTGCTGAATGGGAAAAAGGTCAAATAATAAAGGAGTTGGACAGCACAAAGAGACTAATAGAAGAATTAAAACTTAACCTAGAGAGAGCACAAACAGAAGAGCGTAAAGCAAGACAGGACTCAGAACTTGCAAAGCTCAGAGTTGAAGAGATGGAGCAGGGTGTTGCAGAAGAATCAAGTGTTGCAGCCAAGGCACAACTTGAGGTTGCCAAAGCCAGGTATACAGCAGCTGTTTCAGATTTAATAGCTGTGAAAGATGAGCTGGAAGCATTGCACAAAAATTACGCCTCCTTATTGGCTGATAGAGATCTTGCTATTAAGAAAGCTGAAGAGGCGGTTACTGCATCAAAGGAAGTAGAGAAGACCGTAGAAGATTTAACTATTGAACTAATTGCTGCAAAAGAGTCGTTGGAGACTGCACACGCCACGCATTTGGAAGCAGAGGAACAAAGAATAGGAACAGTAATGGTAAGAGATCAAGATTCTCTTAATTGGGAAAAGGAACTTAAGCAAGCAGAAGAAGAGCTTCAAGGACTCAACCAGCAAATTTTGTCTGCCAAGGAACTCAAATCTAAACTGGAAAAGGCCTCTGCTTTGCTGATTGATTTGAAAGCTGAATTAACTGCTTATATGGAATCAAAGTTAAAGCTGGAAGGTGATGAAGAAGGACACTCGAACGGAGGCCCAGAAGAACCAGTGAAAAAGACACACACCGACATACAAACAGCAGTGGCATCAGCCAGAAAGGAACTTGAGGAAGTAAATCTTAACATAGAGAGAGCAACTGCTGAGGTTAGTTGCTTGAAGGTAGCTGCAACATCATTAAAATCAGAACTTGAACAAGAAAAATCAACTCTTGCTGCCATTAGGCAAAGAGAGGGAATGGCCTCTATTGCAGTTGCGTCTCTTGAAGCTGAATTGGAAAAGACCAGATCAGAAATAGCTTTGGTTCAGATGAAGGAGAAAGAAGCTAAAGAGAGAATGATCGAACTTCCCAAGAAGTTACAACTAACAGCTGAAGAGACTAATCAGGCCAACTTACTTGCTCAGGCAGCTCGTGAAGAGCTACAGAAAGTAAAGGCAGAAGCAGAGCAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGTAGATTACTTGCATGTCAAAAGGAGATGGAGGCTGCAAAGGCTTCTGAAAAGTTGGCAATAGCAGCAATTAAAGCATTGCAAGAGAGTGAAGCAACCAGAAGCAAAAATGAAGTGGACCCGTCAGCTGGGGTAACACTTTCTTTGGAGGAGTACTATGAGCTTAGCAAACGAGCACATGAGGCAGAAGAGCGAGCCAATATGAGGGTTGCAGCTGCTAATTCTGAAATTGATAAAGCTAAGGAGTCTGAATTGAAAGCCTTTGAAAACTTGGACGAAGTGAATAGAGAGATAGCTGCTAGAAGGGAATCTTTGAGGTTGGCAATGGAAAAGGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAGGAATTAAGAAAGTGGAGAGCTGAAAATGAACAACGAAGAAAGGCTGGTGACCTTGGCCAAGGAGTGGCTAACCAGAGTAAAAGCCCTAGGGGTAGTTTCGAGGGGAGTACGGATGCAAATAATTTTGACCGCTCTAGTGATGCAGCTAATCCTGCACATTACTTGTCAAGTCCAAAGGCTAAGGCTAATGTGCATGCAAACAAAGATGAAAGTGGATCATCCCCGGAAACAAAACATGGAAAAAAGAAAAAGAGATCAATTTTCCCAAGGGTTTTGATGTTCTTTGCTAGAAGAAAACACTCAAGCAAAGGGTAA 2964 0.4248 MEDVEDKIPPVSSSKVAGATPLAEHVGDKLPSESSSKIAVEAPLAEHVGDKLPSESSPKIAEETPLAEHVEDKLPSEFSPKIAEVTPLAEHVGDKLPLESSSEIVKATPLTEHAGDDQPSAYSSKIDEEPPLAEHVINNYEASSKIAENLTLAEHVIDTLPSESTTKIAEEMPSAEPPEENTQVINPPDNQSSTEAPTVPLSNGKMESDTHLPVNEFSELSVLSNASNDLTILQDECVSVVNSVSNPDTAVDVTEKSQQITSVEDSEPGSVENASDRHELQDDVSNVTADSDADNEIRLSASSSETKDLPNDHDGSLPRGKIFDAKKRLIDTAPPFESVKEAVSKFGGIVDWKAHKIQTVERRNHVEIELEKVQEEIPEYQKQAEAAEWEKGQIIKELDSTKRLIEELKLNLERAQTEERKARQDSELAKLRVEEMEQGVAEESSVAAKAQLEVAKARYTAAVSDLIAVKDELEALHKNYASLLADRDLAIKKAEEAVTASKEVEKTVEDLTIELIAAKESLETAHATHLEAEEQRIGTVMVRDQDSLNWEKELKQAEEELQGLNQQILSAKELKSKLEKASALLIDLKAELTAYMESKLKLEGDEEGHSNGGPEEPVKKTHTDIQTAVASARKELEEVNLNIERATAEVSCLKVAATSLKSELEQEKSTLAAIRQREGMASIAVASLEAELEKTRSEIALVQMKEKEAKERMIELPKKLQLTAEETNQANLLAQAAREELQKVKAEAEQAKAGVSTLESRLLACQKEMEAAKASEKLAIAAIKALQESEATRSKNEVDPSAGVTLSLEEYYELSKRAHEAEERANMRVAAANSEIDKAKESELKAFENLDEVNREIAARRESLRLAMEKAEKAKEGKLGVEQELRKWRAENEQRRKAGDLGQGVANQSKSPRGSFEGSTDANNFDRSSDAANPAHYLSSPKAKANVHANKDESGSSPETKHGKKKKRSIFPRVLMFFARRKHSSKG 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00442 987 MobiDBLite consensus disorder prediction 179 209 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 52 78 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 946 960 - -
Cca07g00442 987 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 296 984 - -
Cca07g00442 987 Coils Coil 547 591 - -
Cca07g00442 987 Coils Coil 629 677 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 108 134 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 904 935 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 892 987 - -
Cca07g00442 987 Pfam Weak chloroplast movement under blue light 328 895 IPR008545 -
Cca07g00442 987 MobiDBLite consensus disorder prediction 249 269 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 1 78 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 286 306 - -
Cca07g00442 987 Coils Coil 822 891 - -
Cca07g00442 987 Coils Coil 727 775 - -
Cca07g00442 987 Coils Coil 494 521 - -
Cca07g00442 987 Coils Coil 685 712 - -
Cca07g00442 987 PANTHER WEB FAMILY PROTEIN-RELATED 296 984 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 270 285 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 249 320 - -
Cca07g00442 987 Coils Coil 363 434 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 161 209 - -
Cca07g00442 987 MobiDBLite consensus disorder prediction 603 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00442 Cca-Chr7 5858061 5864198 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00442 07 5858061 5864198 Cca07g00442 07 5858061 5864198 ECH
Cca05g00178 05 4028125 4032948 Cca07g00442 07 5858061 5864198 PCT