Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00441 ATGCATGGTTCAAGTCCTCAAAAGATGGTGAAGACAGTGGCATCTAAATCTTTGATTACCAGAATCAATTTGGTTTTCCTTTTCGTTTTTCTGGTTGTTTATGCAACCGTTCTTCTCCCTCCACTTTCTTCTGACTATTTCGAGAATGCAGGCTCTCTCGTGAGGTGCTCCTTGCGCGAATGTCATCACAGGACAGAACGTAACTTGAAAATGAAAGCAGTATTGGAGGTACCTCAAGGGAACAAGGGTGCAAATAAGATAGAAGTACCAAGCTTTTTTGACGAGTTGGGGAGGGGAATGAAAATAGGAATGGTGAACGTGCAAGAAGACGATGTGAGTGGATGGAGCATGCACGGGGAAACAACAAGAGTTTATTTTGAGAGGGTGTCAGAGTTTTTGAACTGGACAGACTTGTTTCCGGAATGGATAGACGAGGAGGAAGAGAATGGTGTGCCAACATGCCCGGAGATACCAATGGCAGAGTATGCAGAATATGGAAGCATGGATGTGATCGTGGCTAAGCTGCCATGCAGTTATCCCAAACAAGGGTGGGGGAGGGACGTTTTTCGGTTGCAAGTTCATCTCATAGTTGCTAATCTAGCCGCCAAGAATGGGAGAGGGAAGACAAAAGTGGTATTTTGGAGCAAGTGTAGACCATTGCTGGAGCTTTTTCCATGCGACCACTTGGTTAAGCGGGAAGGTGAATGGTGGTATTTTGAACCTGATATCAAGAGCTTACAACACAAGCTTTCATTGCCCGTTGGCTCCTGCAAGTTGGCCTTGCCTCTCTGGGAACAAGGAATTGACGAGGTGTACGACTGGTCGAAGATCGAGAAAAGCGCGAGAAGCATTGGAAGAATGCAACGGTCAGCGTACGCGACGGTGCTGCACTCGTCGGAAGTGTACGTTTGCGGCGCAATAACACTGGCGCAGAGCCTCCGCCAGACAGGGACAAAACGCGACCTAATCCTGCTGACGGACAAGTCAATCTCGGTTCCCACACGTGTGGCGCTGTCGGAAGCGGGGTGGAAGATCCGAGTGATAACCCGGATCCGAAACCCGAAAGCGGAGAAAGGAAGCTACAACGAATACAACTACAGCAAGCTGAGGCTGTGGCAGCTGACAGACTACGAGAAAGTAATATTCATCGACTCGGACATCATCGTACTCCGCAAACTGGACATCCTCTTCGAGTTCCCGCAGATGTCGGCGACGGGGAACGACCAATCGATCTTCAACTCGGGGATCATGGTGATCGAGCCGTCCAAGTGCACGTTCCGCATTCTGATGCGGCAGCGCGACGACATCGTTTCGTACAACGGGGGGGACCAGGGGTTTCTGAACGAGGTGTTCGTGTGGTGGCACAGGTTGCCTCGGAGGGTGAACTTTCTGAAGAACTTCTGGGCCAACACCACGCTGGAGGCTCGGGTGAAGAACGCCATGATGGGGGCGGAGCCGCCCAAGGTCTACGCCATCCACTACCTCGGGTGGAAGCCCTGGCACTGCTACAGGGACTACGACTGCAACTGGGACACACTCGAGCAGAGGGTCTACGCCAGTGACGTGGCGCATCGCAGGTGGTGGAAGCTCCACGACGCCATGGATCAAGGGTTGCAGAGCTTTTGTGGGTTGACAAAACGGAGTCAGACGAAGCTCAACTGGGAGCGGAGGAAGGCCAAGAAGATGGGGTTACCCGATGGACATTGGAAAATCAATATCACTGATCCTAGACGATTTCCCGCTCTCTTGATGGATTAG 1758 0.5148 MHGSSPQKMVKTVASKSLITRINLVFLFVFLVVYATVLLPPLSSDYFENAGSLVRCSLRECHHRTERNLKMKAVLEVPQGNKGANKIEVPSFFDELGRGMKIGMVNVQEDDVSGWSMHGETTRVYFERVSEFLNWTDLFPEWIDEEEENGVPTCPEIPMAEYAEYGSMDVIVAKLPCSYPKQGWGRDVFRLQVHLIVANLAAKNGRGKTKVVFWSKCRPLLELFPCDHLVKREGEWWYFEPDIKSLQHKLSLPVGSCKLALPLWEQGIDEVYDWSKIEKSARSIGRMQRSAYATVLHSSEVYVCGAITLAQSLRQTGTKRDLILLTDKSISVPTRVALSEAGWKIRVITRIRNPKAEKGSYNEYNYSKLRLWQLTDYEKVIFIDSDIIVLRKLDILFEFPQMSATGNDQSIFNSGIMVIEPSKCTFRILMRQRDDIVSYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTLEARVKNAMMGAEPPKVYAIHYLGWKPWHCYRDYDCNWDTLEQRVYASDVAHRRWWKLHDAMDQGLQSFCGLTKRSQTKLNWERRKAKKMGLPDGHWKINITDPRRFPALLMD 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00441 585 PANTHER GLYCOGENIN SUBFAMILY MEMBER 7 578 - -
Cca07g00441 585 PANTHER UDP-GLUCURONATE:XYLAN ALPHA-GLUCURONOSYLTRANSFERASE 2 7 578 IPR030519 GO:0005794|GO:0009834|GO:0015020|GO:0045492
Cca07g00441 585 SUPERFAMILY Nucleotide-diphospho-sugar transferases 287 535 IPR029044 -
Cca07g00441 585 Pfam Glycosyl transferase family 8 295 399 IPR002495 GO:0016757
Cca07g00441 585 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 287 536 IPR029044 -
Cca07g00441 585 CDD GT8_Glycogenin 291 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00441 Cca-Chr7 5843089 5846148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00441 86 584 Glycosyltransferase AT4G33330 66.339 0.0 702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00441 07 5843089 5846148 Cca07g00441 07 5843089 5846148 ECH
Cca05g00179 05 4047311 4054542 Cca07g00441 07 5843089 5846148 PCT