Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00424 ATGCATGCAGCTGCAGAAGATTCAGAACAAGTGCAAAAGATGAACACCACCGTCAGGTCCAGGCTGCAACAAAGGAAACCTCCAATCACACTGTCACATGATAAGGCAGAAATGAGGGGAAGCTCGCGAGGTGGAGCAAATAATTCTGTTAAGGGCGGAAAAGCATCGAACAAAGACAGAAAATTGGCTTTGCAACAAGATGTTGACAGGTTGAAGAAGAAGCTTAGGCATGAGGAGAACATCCACAGAGCATTGGAGAGAGCTTTCAATAGGCCTTTGGGAGCTCTGCCTCGTCTTCCCCCATATCTCCCTCCTTATACTCTAGGACTTCTGGCTGAGGTGGCAGTGCTGGAAGAAGAAATTGTAAAGCTTGAAGAGCAGGTTGTTCATTTCAGGCAGGACTTATACCAGGAAGCTGTCTACATGTCATCCTCTAAGATGAAACTTGAGCATTCAGCAGGTGTGAAGAATTCAATCCCAAATAGTAGTCCCAAATCGTGTAACTTGCAGTCCCTTTCCCAGACAATGGATAATGCTGCAACATCTGAGACTAGGCCTGCAACGACACTTCCAAAGGATAGACATGGAAAAGAGAACCAATCATGTACTAATTCGTCCAAGAGCAGCAAGCAATCCATATGTAAAGGCCAAACTACAAAATCGCCGATTAAGAAACTTCCCGTTGACAATAAATCACTGCAGAAACGTTGGGATCCTCCAAAAAAAAAGCAAGAACTAAGGCTGAACCACCAGCAAATTGCAGAAGTAGGAAATCATAGTCTACACGAAAAATCACGAGGGGATGAAAGTCCAAATATAATCTCTGAAAATATTCTAAGGTGTTTATCAAGCATTCTCTTGAGAATGAGTGATGCGAAGAATTTGGATTCTACCGGTGATGTACCATCCTCATGGACTCCAAAATCTAAAATCTGTGTTGAAGACCCTTATGGGATATGTTTGGAATTTGGAAAGAGGAATATTGGTCCATACAAGCAATTACGTGCAATTGAAGCTAAATCATTCGATCCAAAACGAACTGCAAAGTCTTTGTTTTTACTACATCGGTTGAAAATTCTTTTTGGAAAACTAGCCCGTGTCAACTTTGAGAATCTCAATCACCAGGAGAAGCTTGCATTCTGGATCAACATCTATAACTCATGTATGATAAACGCATACATAGAAAATGGCATACCAGAAAGTCCTGAAATGGTTGTTGCACTGATGCAGAAGGCGACAATAAATGTTGGTGGACACTTGCTAAGTGCAACAACCATAGAACATTGCATTCTAAGACTTCCTTATAACTGGAAATTTCTAAATTTTAAACAGACATTATCAAAGGGAGGGAAAAATCACGAAACTTACGGACTGGAATTGTCAGAACCCCTAGTGACATTTGCTCTATCGTGTGGAACTTGGTCCTCTCCTGCTGTGAGAGTTTACACGGCATCTCAGGTTGAGAATGAACTTGAAATGGCGAAAAGAGAATACTTACAGGCTGCAGTTGGAATTTCAACATCCAAGTCTGTTATCCCAAAGTTGCTGGATTGGTATTTACTGGACTTTGCAAAAGACTTGGAATCATTGCTGGATTGGATATGCCTCCAATTACCAAGTGATGTGGGGAAAGAAGCCATTAAGTTCCTCGAGAAAAGAAAAACCGAGCCACTCTCACAATTTGTACAGATTATGCCATATGAGTTCAATTTTAGATACTTGTTGTGCACATAG 1734 0.4135 MHAAAEDSEQVQKMNTTVRSRLQQRKPPITLSHDKAEMRGSSRGGANNSVKGGKASNKDRKLALQQDVDRLKKKLRHEENIHRALERAFNRPLGALPRLPPYLPPYTLGLLAEVAVLEEEIVKLEEQVVHFRQDLYQEAVYMSSSKMKLEHSAGVKNSIPNSSPKSCNLQSLSQTMDNAATSETRPATTLPKDRHGKENQSCTNSSKSSKQSICKGQTTKSPIKKLPVDNKSLQKRWDPPKKKQELRLNHQQIAEVGNHSLHEKSRGDESPNIISENILRCLSSILLRMSDAKNLDSTGDVPSSWTPKSKICVEDPYGICLEFGKRNIGPYKQLRAIEAKSFDPKRTAKSLFLLHRLKILFGKLARVNFENLNHQEKLAFWINIYNSCMINAYIENGIPESPEMVVALMQKATINVGGHLLSATTIEHCILRLPYNWKFLNFKQTLSKGGKNHETYGLELSEPLVTFALSCGTWSSPAVRVYTASQVENELEMAKREYLQAAVGISTSKSVIPKLLDWYLLDFAKDLESLLDWICLQLPSDVGKEAIKFLEKRKTEPLSQFVQIMPYEFNFRYLLCT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00424 577 MobiDBLite consensus disorder prediction 9 27 - -
Cca07g00424 577 MobiDBLite consensus disorder prediction 1 62 - -
Cca07g00424 577 Coils Coil 107 134 - -
Cca07g00424 577 MobiDBLite consensus disorder prediction 229 246 - -
Cca07g00424 577 MobiDBLite consensus disorder prediction 175 246 - -
Cca07g00424 577 PANTHER TRANSCRIPTION FACTOR 10 576 - -
Cca07g00424 577 Pfam Leucine-zipper of ternary complex factor MIP1 57 138 IPR025757 -
Cca07g00424 577 MobiDBLite consensus disorder prediction 201 225 - -
Cca07g00424 577 Coils Coil 54 88 - -
Cca07g00424 577 Pfam Protein of unknown function, DUF547 370 499 IPR006869 -
Cca07g00424 577 PANTHER EXPRESSED PROTEIN 10 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00424 Cca-Chr7 5617307 5621404 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00424 07 5617307 5621404 Cca07g00424 07 5617307 5621404 ECH
Cca05g00209 05 4496051 4500290 Cca07g00424 07 5617307 5621404 PCT