Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00420 ATGGAAGAAATGAACAGAAGctcctcctccacaacctcttcctccgactcttgctcttccgactccAACCACAGGAATACTAACAACCCCGACAGAATCAAAGGCCCCTGGAGCGCCGAAGAGGATCGGATCCTCACTCGACTCGTCGAACGATATGGGCCCCGAAACTGGTCCTTGATTAGCCGCTACATAAAGGGCAGGTCCGGCAAGTCCTGCAGGCTAAGGTGGTGTAACCAGCTAAGCCCCTCCGTCCAGCACCGCCCCTTCTCGCCCCAAGAGGATCAGACCATCATAGCGGCCCACGCCCAGTACGGTAACAGGTGGGCCACCATTGCCCGGTTACTTCCGGGCCGAACCGATAATGCCGTTAAAAACCACTGGAACTCCACGCTCAAGCGCCGAGCCAACCAAGGTGCCGCTTCTTCTTCCGCTCCTTCTCTCCACTCCCACTTCCAGGATGACCCGTTGACCGCGTTGACTCTTGCTCCCCCCGGTATTGCTTCTGCCGCCGCGCCCCAGGAACCCCTCCCGGACCACCGCCCCTCGCCGGAGACTGCGCCGCCCGCCTTCTGGGATATGATGAGGGACGTCATCGCCAGGGAAGTCAGGGAATACGTGTCTTCCAATTTTTCCGACAACTCGGCTTTCCATTAA 654 0.5459 MEEMNRSSSSTTSSSDSCSSDSNHRNTNNPDRIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVQHRPFSPQEDQTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRANQGAASSSAPSLHSHFQDDPLTALTLAPPGIASAAAPQEPLPDHRPSPETAPPAFWDMMRDVIAREVREYVSSNFSDNSAFH 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00420 217 Gene3D - 33 85 - -
Cca07g00420 217 MobiDBLite consensus disorder prediction 1 37 - -
Cca07g00420 217 CDD SANT 88 131 IPR001005 -
Cca07g00420 217 PANTHER MYB PROTEIN-RELATED 1 203 - -
Cca07g00420 217 SMART sant 33 82 IPR001005 -
Cca07g00420 217 SMART sant 85 133 IPR001005 -
Cca07g00420 217 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Cca07g00420 217 MobiDBLite consensus disorder prediction 1 33 - -
Cca07g00420 217 Pfam Myb-like DNA-binding domain 37 96 - -
Cca07g00420 217 PANTHER MYB TRANSCRIPTION FACTOR 1 203 - -
Cca07g00420 217 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Cca07g00420 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Cca07g00420 217 Gene3D - 87 153 - -
Cca07g00420 217 MobiDBLite consensus disorder prediction 168 188 - -
Cca07g00420 217 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Cca07g00420 217 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Cca07g00420 217 CDD SANT 36 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00420 Cca-Chr7 5558715 5560812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00420 31 155 MYB Transcription Factor Family AT3G50060 69.600 1.05e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g00420 Myb_DNA-bind_6 8.2e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00420 07 5558715 5560812 Cca07g00420 07 5558715 5560812 ECH
Cca05g00211 05 4541825 4542715 Cca07g00420 07 5558715 5560812 PCT