Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00417 ATGAGCACCGCTAACTCTAACAACCCTTCGCCCACCATTCAGCAACGCAGGCTCACTCGCCAGAATAGGCTTCGCTACCTCACCGATGAAGACGCTGGTTTGCGTTCAACCATTTCTCTACCCGCCTCTCCTCTTCCTTCCTTCAAATCCGGTTCCTCTTCCGACCACTGGTCTTCCTCCGCCGTTCCTCAGCCGCTCCCGCTTCCCGAGTCCCCGTTGACCCGCCGCCACCTCGGATCTCCCCCCTTCGAACATCGTGCTTTCGCTTTTCCCAGGAGATCCGTGGATCACGATGCCGTCAGAAGTCTAAGGTCTGCTAGCAATTTGGGTAGACCTTCTTTTGATCCGGCGCCTGCAAATGCCAGATATGATTTGAGAGTTAATATTCCTCCTGCAAGAGTGTTGGCAGGCAATACTAGTTCATGTAAGAATCACAGAGAGCTCTCTCATGATAATGACTCTGAAAACGTTTCAAACTTGAGATTGCCTCTTGCGGCCAAGAGTGCCCCCAACAGCATATTCTCCAGTCCTGTTACTAGTCCACGTAGATCCAGCAATGTAGATTTTTATGATCCTTCCATCATTTTTCCTCAAGATTTTAATGACATTTTGAAAGTGTCACCACCGGCTAAAACTGCTCAGAGTCCAGAGCGGTCCCCTCTGCGCAGCCCGCGGAGCCACCTTAATCCAGAGGGGTGTCAGAGTCAGCCACATAAATTTTGCTCCAGAGTGTGGCCTGAAAATAATCATGTGGATGCACATCCACTGCCCCTTCCTCCTAGAGCTTCACCACAGCCGGCAAACTCATCTCCGCAGCATCAACCAAGTATCCTGCATCTCAACACAGAAAATTCACCTTCAATGAAAGGACAATGGCAGAAAGGAAAACTTATTGGACGTGGATCATATGGATCTGTTTATCATGCAACCAACCTGTATGCGCTCCATCCTTTCTTTCTCGACGTTGATCTGTTCCCTGATGATCCTAAGTCTGCTGACTGCATAAAGCAACTAGAGCAGGAAATCAGAATTCTCCGTCAATTACACCACCCCAACATTGTGCAGTATTATGGAAGTGAAATAGTTGGTGATCGATTGTACATATATATGGAGTATGTTCATCCTGGATCACTTCATAAGTTTATGCATGAACATTGTGGAACTATGACAGAATCTGTGGTTCGCAATTTCACACGACATATTCTCTCTGGATTGGCATACTTACACAGTACCATGACTATTCACAGGGATATCAAAGGTGCAAACTTGTTGGTGGATGCATCAGGCACTGTTAAGCTTGCGGATTTCGGGGTGTCAAAAATTCTGACAGAGAAATCATTTGAACTTTCATTGAAGGGCAGTCCCTACTGGATGGCTCCGGAGCTCATGAAGGCTGCCATAAAGAAAGAATCCAGTCCCGACATTGCCATGGCCATTGATATATGGAGCTTAGGGTGCACTATAATCGAAATGCTGACAGGAAAACCTCCTTGGAGCGAATTTGAAGGGGTGAGCACCTTATTATGCATGTGA 1533 0.4723 MSTANSNNPSPTIQQRRLTRQNRLRYLTDEDAGLRSTISLPASPLPSFKSGSSSDHWSSSAVPQPLPLPESPLTRRHLGSPPFEHRAFAFPRRSVDHDAVRSLRSASNLGRPSFDPAPANARYDLRVNIPPARVLAGNTSSCKNHRELSHDNDSENVSNLRLPLAAKSAPNSIFSSPVTSPRRSSNVDFYDPSIIFPQDFNDILKVSPPAKTAQSPERSPLRSPRSHLNPEGCQSQPHKFCSRVWPENNHVDAHPLPLPPRASPQPANSSPQHQPSILHLNTENSPSMKGQWQKGKLIGRGSYGSVYHATNLYALHPFFLDVDLFPDDPKSADCIKQLEQEIRILRQLHHPNIVQYYGSEIVGDRLYIYMEYVHPGSLHKFMHEHCGTMTESVVRNFTRHILSGLAYLHSTMTIHRDIKGANLLVDASGTVKLADFGVSKILTEKSFELSLKGSPYWMAPELMKAAIKKESSPDIAMAIDIWSLGCTIIEMLTGKPPWSEFEGVSTLLCM 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00417 510 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 6 507 - -
Cca07g00417 510 MobiDBLite consensus disorder prediction 40 61 - -
Cca07g00417 510 SMART serkin_6 292 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00417 510 MobiDBLite consensus disorder prediction 267 291 - -
Cca07g00417 510 MobiDBLite consensus disorder prediction 1 80 - -
Cca07g00417 510 Pfam Protein kinase domain 293 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00417 510 MobiDBLite consensus disorder prediction 212 236 - -
Cca07g00417 510 ProSiteProfiles Protein kinase domain profile. 292 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00417 510 Gene3D Transferase(Phosphotransferase) domain 1 289 510 - -
Cca07g00417 510 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 6 507 - -
Cca07g00417 510 MobiDBLite consensus disorder prediction 252 293 - -
Cca07g00417 510 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g00417 510 SUPERFAMILY Protein kinase-like (PK-like) 267 506 IPR011009 -
Cca07g00417 510 MobiDBLite consensus disorder prediction 208 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00417 Cca-Chr7 5523127 5529235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00417 17 508 MAP Kinase Kinase Kinase AT5G66850 43.750 8.68e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Cca07g00417 Pkinase 8.4e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00417 07 5523127 5529235 Cca07g00417 07 5523127 5529235 ECH
Cca05g00212 05 4552920 4558781 Cca07g00417 07 5523127 5529235 PCT