Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00409 ATGTACACTAGTTGGCACAAAGTAATGCCAGAGCCAGACCTCTCCTTAAACATCAGCCCACCCTTCAGCTCAGATTCTGACGCCAAACAAAGCTGCAACGGATTAACCTTAACCACCAAAACGCTTTACAACGATATAAGCTCAAGCTCAACCTCCGATTCTGGTAGCACTGCAGGAAGCGATTTAAGCCATGAAAATGGTGTTCCCCACAGGGACAAGGACACTGTCTACGACCTCGGTCATCGTGTACCCACTTTGAGCTTAGGCTTCGAAACGGCAAATTTGAATCCTAATCATGTCCAACGAAATTCTAGAGTCGTTCACGGTGCGAAGAGAAGCATCAGAGCTCCCAGAATGCGATGGACTACAACCCTCCATGCTCATTTTGTTCATGCGGTTCAGAGTCTTGGTGGTCATGAAAGAGCAACTCCAAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTAACTCTAGCTCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGGGCTCCGACAAAGGCAGCGCAGGTTATGGGCAGACAGATATAGGGTTGAGCCAAAAGCCAGGGATTGTCGATCTGCATGGAGGCTTAGCTTTTGAAAGGGCAAATTTGCCACAACCGCTGCTAAAATCCCAAAGGTCGTCATGGCAATCACTGATAGAGACAAATTCAATAAATTATATACAAAACCCCATCATCAATTCGACGTGTTCTCATCTCAAAGGAAACCAAACCACGGTGGGTGGACAGCATTATGTAGGCCTGTCGAATTGCATGGAGGAGAAATTGGATTCTTGCTCTTTGTCACGTTCGGATACGATTCTTGACCTAGAATTTACCCTTGGTAGGTCCACTTCTAGTTGCAAACAGTCAGCACGGAATCAAGAGAATTAA 906 0.4547 MYTSWHKVMPEPDLSLNISPPFSSDSDAKQSCNGLTLTTKTLYNDISSSSTSDSGSTAGSDLSHENGVPHRDKDTVYDLGHRVPTLSLGFETANLNPNHVQRNSRVVHGAKRSIRAPRMRWTTTLHAHFVHAVQSLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKGSDKGSAGYGQTDIGLSQKPGIVDLHGGLAFERANLPQPLLKSQRSSWQSLIETNSINYIQNPIINSTCSHLKGNQTTVGGQHYVGLSNCMEEKLDSCSLSRSDTILDLEFTLGRSTSSCKQSARNQEN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00409 301 Gene3D - 116 172 - -
Cca07g00409 301 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 101 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca07g00409 301 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 101 288 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cca07g00409 301 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 8 101 - -
Cca07g00409 301 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 101 288 - -
Cca07g00409 301 Pfam Myb-like DNA-binding domain 118 169 IPR001005 -
Cca07g00409 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 170 IPR006447 GO:0003677
Cca07g00409 301 MobiDBLite consensus disorder prediction 47 63 - -
Cca07g00409 301 SUPERFAMILY Homeodomain-like 114 170 IPR009057 -
Cca07g00409 301 MobiDBLite consensus disorder prediction 47 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00409 Cca-Chr7 5373826 5378995 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca07g00409 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00409 07 5373826 5378995 Cca07g00409 07 5373826 5378995 ECH
Cca05g00224 05 4766908 4772265 Cca07g00409 07 5373826 5378995 PCT