Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00390 ATGGCGAAATCTAGCGCTGACGATGCCGAGCTACGGCGAGCTTGTGAGGCCGCAATCGAAGGCAGCAAGCATAAGGTCTCTCTCTCCATTCGAACAGTCAAGACTCACGGCACCTGGGGGAAATCTGCTAAGCTTGGTCGTCAAATGGCTAAGCCTAGGGTTCTCGCTCTCTGCACAAAAGCGAAAGGTCAGCGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCAAATGGAGGCGTTCTTGAGCCTGCTAAGCTATACAAGCTGAAGCACCTCTCAAAAGTGGAAGTTGCAGCAAATGACCCAAGTGGATGTACATTTACACTGGGGTTTGATAACCTTAGAAACCAGACTGTGGCTCCTCCACAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTGCTTTGTATCTTAAATATCTGCAAAGATGTCTTAGGTCGCCTTCCTAAGGTTGTTGGTGTTGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATAAACCTGCAGTTTCCACTCAAAGTAACCAACAAGATGGTGCTTCTGTTGAATCTGCTGTGACTGAAACAGAATTGAAAGTCAATGTTGAAAAGGAACTTGTTTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATATCATGGGTGTTGGTGAAGCAGAGGCTTTTTCTGAAAGGTTAAAAAGAGAGCTCCAGGCTCTTGAAGCAGCAAATGTGCATGCCATTTTAGAAAGTGAACCTTTGATAGATGAGGTGTTGCAAGGGCTTGAATCAGCAACAAATTGTTTGGAAGACATGGATGAGTGGTTAGGCATGTTCAATGTGAAACTTCGACACATGAGGGAAGATATTGAATCAATTGAATCCCGCAATAACAAGTTGGAAATGCAATCAATAAATAACAAAACTCTTATTGAAGAGCTTGATAAGCTTCTTGAGCAATTGAGTATCCCTTCTGGGTACTCAGCATGTTTGACAGGAGATTCATTTGACGAAGCACTAATGATGCAAAATATAGAAGCATGTGAGTGGTTGACAACTGCCATGCGTGGTCTTGAAGTGCCTAACATAGATCCTATGTATGCAAAAATGAGAGGAGTTAAAGAGAAGCGTGGCGAACTTCAAATAATAAAGTCTACTTTTGTCGGGAAAGCTTCTGAATACATGAGATGTTACTTTGCTAGTTTTGTGGACTTCATGTTAAATGATAAAAATTACTTTTCTCAGCGGGGACAGTTGAAGAGGCCAGATCATGCTGACTTGAGGTTCAAGTGCAGGACATATGCACGCCTTTTGAAGCATTTAAAGATTCTTGATAAGAATTGCTTGGGTCCATTGAGAAAAGCTTATTGCGCTTCTTTAAACTTGCTTCTTCGCAAAGAGAGCACTTTTTTGGCTCACTTCTTGTGCTTTGAAGATCCTTCAGTTATTGACAGTAAAAAAGCTGGATCCAATAACGGGGACAATGATGATGATTTGGGAATGTTGGACATTGATGAGGATGACAGTAAATCTAGTACACGTAAAAATTCGGTGGATTTTGCAGCTTTAAATGAATCACTTCAAGATTTGCTTGATGGAATGCAAGAAGATTTTTATGCTGTTGTGGATTGGGCATACAAGATTGATCCTTTATGTTGCATATCAATGCATGGAACTACAGAACGCTATCTCTCTAGTCAAAAAGCTGATGCAGCAGGATTTGTACGCATTCTGCTTGGTGACTTGGAGTCTCGCATATCTATGTTGTTCAGTCGTTTTGTTGATGAAGCATGCCATCAGATTGAAAGACATGAGCGCAATGCTCGCCAAACGGGTGTCCTACCGTACATTCCTAGATTTGCATCCCTTGCAACACGGATGGAGCAGTATATATCAGGACAGTCGAGGGATTTGGTTGACCAAGCATACACAAAATTTGTTAGCATAATGTTTGTAACTTTGGAAAAAAATGCACAAGCAGATCCAAAGTATGCAGATGTTTTTCTTATCGAAAACTATGCGGCATTTCAGAATAGTTTGTATGACCTTGCCAATGTGGTGCCCACTTTGGCCAAGTTTTATCATCAAGCTAGTGAAGCCTACGAGCAAGCTTGCACCCGCCATATTAGCATGATTATCTACTATCAATTTGAACGCCTATTCCAGTTTGCTAGAAGGATTGAGGACTTAATATTGAATAATGTTGCACCTGAAGAGATTCCTTTCCAGGTTGGGTTGTCAAAAGTGGATCTGCGGAAGACGTTAAAATCCAGTTTGTCAGGGGTGGACAAGTCCATTGCTGCGATGTACAAGAAGTTGCAGAAGAACTTGACTTCGGAGGAACTGTTACCTTCCTTATGGGATAAATGCAAGAAGGATTTTCTTGATAAGTACGAGACTTTTGTCCAACTTGTCGCCAAGATTTACCCTGCTGAATCAGTCCCTTCTGTAGCAGAGTTGCGAGATCTTTTA 2466 0.4189 MAKSSADDAELRRACEAAIEGSKHKVSLSIRTVKTHGTWGKSAKLGRQMAKPRVLALCTKAKGQRTKAFLRVLKYSNGGVLEPAKLYKLKHLSKVEVAANDPSGCTFTLGFDNLRNQTVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGVDVVEMALWAKENKPAVSTQSNQQDGASVESAVTETELKVNVEKELVSQAEEEDMEALLGTYIMGVGEAEAFSERLKRELQALEAANVHAILESEPLIDEVLQGLESATNCLEDMDEWLGMFNVKLRHMREDIESIESRNNKLEMQSINNKTLIEELDKLLEQLSIPSGYSACLTGDSFDEALMMQNIEACEWLTTAMRGLEVPNIDPMYAKMRGVKEKRGELQIIKSTFVGKASEYMRCYFASFVDFMLNDKNYFSQRGQLKRPDHADLRFKCRTYARLLKHLKILDKNCLGPLRKAYCASLNLLLRKESTFLAHFLCFEDPSVIDSKKAGSNNGDNDDDLGMLDIDEDDSKSSTRKNSVDFAALNESLQDLLDGMQEDFYAVVDWAYKIDPLCCISMHGTTERYLSSQKADAAGFVRILLGDLESRISMLFSRFVDEACHQIERHERNARQTGVLPYIPRFASLATRMEQYISGQSRDLVDQAYTKFVSIMFVTLEKNAQADPKYADVFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLILNNVAPEEIPFQVGLSKVDLRKTLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKDFLDKYETFVQLVAKIYPAESVPSVAELRDLL 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00390 822 PANTHER SEC3/SYNTAXIN-RELATED 465 822 - -
Cca07g00390 822 Coils Coil 188 208 - -
Cca07g00390 822 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Cca07g00390 822 Coils Coil 221 248 - -
Cca07g00390 822 Pfam Exocyst complex component Sec3 224 466 IPR019160 GO:0000145|GO:0006887
Cca07g00390 822 Pfam Exocyst complex component Sec3 508 808 IPR019160 GO:0000145|GO:0006887
Cca07g00390 822 Coils Coil 281 318 - -
Cca07g00390 822 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Cca07g00390 822 MobiDBLite consensus disorder prediction 485 511 - -
Cca07g00390 822 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 466 - -
Cca07g00390 822 PANTHER SEC3/SYNTAXIN-RELATED 1 466 - -
Cca07g00390 822 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 465 822 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00390 Cca-Chr7 5101681 5135601 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00390 07 5101681 5135601 Cca07g00390 07 5101681 5135601 ECH
Cca05g00229 05 4932791 4958944 Cca07g00390 07 5101681 5135601 PCT