Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00379 ATGACTTCGGACGGCGCCACGTCGGCGGCGGCCAATCGGAGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACCGGAGGAGAGAGAGGCGAAGGAGAGCTATAGCAGCCAAGATATACTCTGGACTTAGGGCGCAGGGGAACTACAATTTGCCCAAACACTGCGACAACAACGAGGTCCTCAAGGCTCTCTGCGCCGAAGCTGGTTGGACCGTCGAAGAAGACGGCACCACCTATCGCAAGGGAAGCAGGGCAGCACTAGCACTAGCACTAGCAGGTGATGGTGCAGGTACCTCCAGCAGAAACACGCCTTTCTCGTCACAAAATCCGAGTCCAATTCCTTCATACCAAGTGAGTCCTTCCTCATCCTCTTTCCCGAGCCCATCTCGTTTGGACGGGAACAACGCGTCAAACCTAATCCCCTACATTCGGCATGCGTTCCCCGCATCTCTCCCTCCTTTAAGGATATCAAACAGCGCCCCTGTCACCCCACCCCTCTCCTCGCCAACTTCCAGAAACCCCAAACCCATTCCCACATGGGACTCCATCGTCAAAACCTCCATGGCATCATCCTTCAaccaccaccgccaccaccaccCTTTCTTCGCCGCTTCTGCCCCGGCCAGCCCCACGCACCGCCACCTCTACCCACCGCCACCTATTCCCGAGTGTGACGAGTCTGATAGCTCCACTGTTGAGTCTGGCCAGTGGCTCAACTTCCAAGCATTTCCACCCTCTGTTTCTGCGATGCCCATCTCTCCCACCTTGAACTTCATCAAACCTGTGGTGAATCAGCAGCACAACCTTCCTATCCAAGAGGAGAGAATTGGGGTGCAGGTGAAGCCTTGGGTCGGGGAGAGGATTCATGAAGTCGGATTGGATGATTTGGAGCTCACGCTCGGAAGTGGCAAGACACCTACTTAG 921 0.5451 MTSDGATSAAANRRKPSWRERENNRRRERRRRAIAAKIYSGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKGSRAALALALAGDGAGTSSRNTPFSSQNPSPIPSYQVSPSSSSFPSPSRLDGNNASNLIPYIRHAFPASLPPLRISNSAPVTPPLSSPTSRNPKPIPTWDSIVKTSMASSFNHHRHHHPFFAASAPASPTHRHLYPPPPIPECDESDSSTVESGQWLNFQAFPPSVSAMPISPTLNFIKPVVNQQHNLPIQEERIGVQVKPWVGERIHEVGLDDLELTLGSGKTPT 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00379 306 MobiDBLite consensus disorder prediction 14 29 - -
Cca07g00379 306 MobiDBLite consensus disorder prediction 93 129 - -
Cca07g00379 306 MobiDBLite consensus disorder prediction 95 129 - -
Cca07g00379 306 MobiDBLite consensus disorder prediction 1 31 - -
Cca07g00379 306 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 304 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cca07g00379 306 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 134 IPR008540 -
Cca07g00379 306 PANTHER PROTEIN BRASSINAZOLE-RESISTANT 1 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00379 Cca-Chr7 4912728 4914544 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Cca07g00379 BES1_N 1e-55 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00379 07 4912728 4914544 Cca07g00379 07 4912728 4914544 ECH
Cca05g00252 05 5431105 5432888 Cca07g00379 07 4912728 4914544 PCT