Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00361 ATGGCCTCTAGCCAACAGGGTTGGACTCCGAAGCAGAACAAAAGATTTGAGAATGCCTTGGCCATCTTTGACCAGGACACCCCTGATAGGTGGCAGAAACTGGCTAGGGCCGTTGGAGGAAAAACGGTGGAGGAAGTGAAAAGGCATTACGAGAAGCTCGTTGAAGATGTCAAGAAGATTGAGGAAGGTCATGTGCCCCTCCCCAATTACAGAAATGTTGCAACTGTGGGAACTAGCACCAGGGGTTATTCTTACATGGATGAAGAAAGGATGAAGGCTCTGAGGCTGCAGTGA 294 0.4932 MASSQQGWTPKQNKRFENALAIFDQDTPDRWQKLARAVGGKTVEEVKRHYEKLVEDVKKIEEGHVPLPNYRNVATVGTSTRGYSYMDEERMKALRLQ 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00361 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 96 - -
Cca07g00361 97 ProSiteProfiles Myb-like domain profile. 8 54 IPR001005 -
Cca07g00361 97 Coils Coil 43 63 - -
Cca07g00361 97 SUPERFAMILY Homeodomain-like 6 62 IPR009057 -
Cca07g00361 97 Pfam Myb-like DNA-binding domain 7 53 IPR001005 -
Cca07g00361 97 CDD SANT 8 54 IPR001005 -
Cca07g00361 97 ProSiteProfiles SANT domain profile. 3 58 IPR017884 -
Cca07g00361 97 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 96 IPR044636 GO:0003700
Cca07g00361 97 Gene3D - 1 67 - -
Cca07g00361 97 SMART sant 4 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00361 Cca-Chr7 4702604 4703202 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca07g00361 Myb_DNA-binding 2.1e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00361 07 4702604 4703202 Cca07g00361 07 4702604 4703202 ECH
Cca05g00285 05 6068451 6069798 Cca07g00361 07 4702604 4703202 PCT