Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00348 ATGAAGCGTCGGTTGCTTTTGGTTTTCTTGGTTCTCTATGTGACAGTCCTAGTAGAAGCTGATTCTGGGTTTGTGAAAACAAGAGGAGTGCAGCTTATGCTTAATGGGAGCCCCTACTATGCTAATGGTTTCAATGCCTATTGGCTTATGTATATTGCTTCTGATCCATCTCAGAGAAACAAGGTCTCTTCAGCGTTTCAAGAGGCTTCTAATCATGGACTTAACATAGCCAGAACTTGGGCATTCAGTGATGGAGGATATAACCCCCTACAATACTCTCCTGGATCCTACAATGAGCAAATGTTCCAGGGGCTGGATTTCGCGATAGCAGAAGCAAGAAAATATGGGATCAAGTTGGTGTTGAGTTTGGTGAATAACTATGAGAACATGGGTGGGAAGAAACAATATGTGGAATGGGCAAGGAGTCAGGGGCAGTCCATAAATTCTGAAGATGACTTTTTCACAAATCCTGTGGTGAAGGGATACTACAAAAACCACATCAAGGCTGTACTTACAAGACGTAATAGCCTGAGTGGAGTTGCTTACAAAGACGACCCAACTATAATGGCTTGGGAACTTATGAACGAGGTTAGGTGCCCTTCCGATCAATCAGGAAAGACGGTTCAGGCCTGGATTACTGAGATGGCATCTTACGTGAAATCCATAGATGGAAACCACTTGCTGGAAGCAGGTCTTGAAGGTTTCTACGGACAGTCAAAGCCAGAGTCTAACCCAAACTTCAATGTAGGAACCGATTTCATTGCAAACAACCAAATCCCAGGCATCGATTTCGCCACAGTGCACTCCTACCCCGATCAATGGCTATCAAGTTCAGGTTATGAAGACCAAATTTCATTCTTAGAACGGTGGCTGAACGAGCACATTCAAGATGCACAGAACACTCTTCACAAGCCACTTCTCTTTGCCGAGTTTGGTATTTCCACAAAAACTTTTGGTGGCAGCTCAACACCAAGGGATCGGTTATTCAACACAGTGTATTCAGCAATATACTCATCCGCAAGTAGTGGCGGTGCTGCTGTTGGTGGCTTATTTTGGCAGCTTCTAGCTCAAGGAATGGATTCTTTTCGAGACGGTTACGAGGTTGTCTTAGGTGAGAGCCCCTCAACGGCCACTTTGATCGCTCAAGAGTCTCAAAAACTAAACCGAATTCGCAAGATGTACGCCAGACTCAGAAACATTGAGAAGTGGAATCGAGCTATGGAAATTAGAGGTGGAAACTAA 1242 0.4444 MKRRLLLVFLVLYVTVLVEADSGFVKTRGVQLMLNGSPYYANGFNAYWLMYIASDPSQRNKVSSAFQEASNHGLNIARTWAFSDGGYNPLQYSPGSYNEQMFQGLDFAIAEARKYGIKLVLSLVNNYENMGGKKQYVEWARSQGQSINSEDDFFTNPVVKGYYKNHIKAVLTRRNSLSGVAYKDDPTIMAWELMNEVRCPSDQSGKTVQAWITEMASYVKSIDGNHLLEAGLEGFYGQSKPESNPNFNVGTDFIANNQIPGIDFATVHSYPDQWLSSSGYEDQISFLERWLNEHIQDAQNTLHKPLLFAEFGISTKTFGGSSTPRDRLFNTVYSAIYSSASSGGAAVGGLFWQLLAQGMDSFRDGYEVVLGESPSTATLIAQESQKLNRIRKMYARLRNIEKWNRAMEIRGGN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00348 413 PANTHER - 8 410 IPR045053 GO:0004553
Cca07g00348 413 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 8 410 - -
Cca07g00348 413 Coils Coil 380 400 - -
Cca07g00348 413 Pfam Cellulase (glycosyl hydrolase family 5) 57 317 IPR001547 GO:0004553|GO:0071704
Cca07g00348 413 Gene3D Glycosidases 20 391 - -
Cca07g00348 413 SUPERFAMILY (Trans)glycosidases 24 379 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00348 Cca-Chr7 4612333 4614543 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00348 07 4612333 4614543 Cca07g00348 07 4612333 4614543 ECH
Cca05g00302 05 6387542 6392458 Cca07g00348 07 4612333 4614543 PCT