Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00347 ATGGATTCAACTTATGCAACCCTGAGTGGCCACCTAGCTAATGTTAGTCAGGGAATTGGAAGAAACAGAAGAATCAGTGGGTTTTGGGGTGAGAATACAAGGTTTTTGAGTGCTCAATCGTGCAAGACTACACGAACCAATAGGAATCTTAGAAACTCCAAGCATGGAACTGGAACCGCTCATGCTGTTCTCACATCAGACATCAACGAAGATTCCATGGCATTTCAGGGGGTACCCACTTTTGAGACCCCCAAAGTGGACCCGAAGAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGGACTCGTCTCTTTCCCCTTACTAGTAGAAGAGCCAAGCCCGCGGTTCCAATAGGAGGGTGTTATAGACTCATTGATATCCCCATGAGCAATTGCATCAATAGTGGCCTCAGAAAAATATTCATTTTGACGCAGTTCAACTCTTTCTCCCTCAACCGCCACTTGTCCCGCGCATACAGCTTTGGAAATGGCTTGACTTTTGGAGACGGGTTTGTGGAGGTCTTGGCTGCAACTCAAACACCTGGAGAGACAGGGAAAAAATGGTTCCAAGGGACAGCTGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGGGATCATCTTTACAGGATGGACTATATGGATTTTGTGCAGAGACATGTTGACACAAATGCTGATATCACAGTTTCATGTGTACCCATGGATGACAGCCGGGCATCAGACTATGGACTGATGAAAATTGATAACACAGGACGCATTATACAGTTTTCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTCTAGGGCTATCACCACAAGAAGCAGACAAAAATCCTTATATTGCATCCATGGGTGTCTACGTGTTCAGAACTGAAACCCTGTTGCAACTATTAAGATGGAATTGCTCTTCATGCAATGACTTTGGATCTGAAATTATACCATCTGCTGTGAGCGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAACCTCGCCCTAACAGAACAGCCTCCCAAATTTGAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCAAGATTCCTTCCACCCACTAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATTTCTCATGGTTGCTTCTTGAGGGAGTGTAGTGTTCAGCATTCTATTGTGGGAGTACGCTCACGTTTAGAGTCTGGTGTGGAGTTTCAGGATACCATGATGATGGGTGCTGACTACTATCAAACTGAGTCTGAAATTGCATCTCTGCTGGCAGAAGGAAAGGTTCCAATTGGTGTTGGGGAAAATACCAAAATCAGGAATTGTATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATCATAGCAAACACCGATGGTGTTCAAGAAGCAGACAAGTCCAAGGAAGGATTCTACATTAGGTCGGGCATCACGGTTATACTGAAAAATGCAACAATTAAAGATGGAACAGTCATATGA 1575 0.4337 MDSTYATLSGHLANVSQGIGRNRRISGFWGENTRFLSAQSCKTTRTNRNLRNSKHGTGTAHAVLTSDINEDSMAFQGVPTFETPKVDPKSVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDIPMSNCINSGLRKIFILTQFNSFSLNRHLSRAYSFGNGLTFGDGFVEVLAATQTPGETGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDNTGRIIQFSEKPKGSDLKAMRVDTTLLGLSPQEADKNPYIASMGVYVFRTETLLQLLRWNCSSCNDFGSEIIPSAVSEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANTDGVQEADKSKEGFYIRSGITVILKNATIKDGTVI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00347 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 188 196 IPR005836 GO:0005978|GO:0008878
Cca07g00347 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 9 524 IPR011831 GO:0005978|GO:0008878
Cca07g00347 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 303 313 IPR005836 GO:0005978|GO:0008878
Cca07g00347 524 Gene3D Hexapeptide repeat proteins 390 524 - -
Cca07g00347 524 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 9 524 - -
Cca07g00347 524 Pfam Nucleotidyl transferase 93 370 IPR005835 GO:0009058|GO:0016779
Cca07g00347 524 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 92 488 IPR011831 GO:0005978|GO:0008878
Cca07g00347 524 CDD LbH_G1P_AT_C 392 518 - -
Cca07g00347 524 CDD ADP_Glucose_PP 94 355 - -
Cca07g00347 524 SUPERFAMILY Trimeric LpxA-like enzymes 386 524 IPR011004 -
Cca07g00347 524 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 97 116 IPR005836 GO:0005978|GO:0008878
Cca07g00347 524 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 81 389 IPR029044 -
Cca07g00347 524 SUPERFAMILY Nucleotide-diphospho-sugar transferases 91 485 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00347 Cca-Chr7 4607851 4612040 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00303 05 6392792 6397406 Cca07g00347 07 4607851 4612040 PCT