Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00328 ATGGCAACCATTACCAATTCAGTTTCCAAGCTACTAACATTGTTTTTCACGGTCTTGTTTGTGGGTTCTAAGCTGATACACTGCAATGTCACATACGACAGAAAGGCTCTTCTCATCAATGGCCAAAGGAGAGTACTCATCTCTGGCTCCATTCACTATCCCAGAAGCACCCCTGATATGTGGGAGGATCTAATGCAGAAGGCCAAACACGGGGGTCTTGATGTCATAGACACTTATGTGTTTTGGGATGTCCATGAACCATCTCCTGGCAATTACAATTTTGAAGGAAGGTATGATCTAGTCCGGTTCATTAAGACGGTGCAGAAGGTGGGGCTTTATGCCAATCTTCGGATTGGACCTTATGTATGCGCTGAGTGGAACTTTGGAGGAATTCCTGTATGGTTGAAGTATGTTCCTGGCATAAGCTTCAGAACGGATAATGGGCCTTTCAAGGCGGCAATGCAAGGTTTCACGCAGAAAATTGTTAGGATGATGCAGAGTGAGAAGTTGTTTCAATCTCAGGGTGGTCCAATCATTCTCTCTCAGATTGAGAATGAGTACGGACCAGAGAGCAGGGCAATGGGAGGTGCTGGTCGTGCATATGTAAACTGGGCTGCAAGAATCGCTGTGGGGTTGGGTACAGGAGTTCCCTGGGTGATGTGTAAGGAAAATGATGCCCCAGATCCTGTGATAAATTCATGTAATGGTTTTTACTGTGATGATTTCTCACCAAATAAACCATACAAGCCTAGCATGTGGACCGAGTCTTGGAGTGGCTGGTTTACAGAATTTGGTGGCCCAATTCACCAGCGACCAGTTCAGGATCTAGCATTTGCAGTTGCTCGTTTCATACAAAAGGGTGGCTCTTATGTGAATTATTACATGTACCATGGAGGAACAAACTTTGGACGATCAGCAGGAGGCCCATTCATAACTACAAGCTATGACTATGATGCTCCAATTGATGAATATGGTTTGATCAGGCAACCAAAATATAGTCATTTGAAAGAGCTTCATAAAGCTATCAAGCGATGTGAACATGCTTTAGTTTCTTCGGATCCTACTGTTGCCTCATTAGGAACTCTACAGCAGGCTCATGTATTCTCTTCAGGGGCTGGAGCATGTGCAGCTTTTCTAGCAAACTATAATGCACAGTCTGCTGCTAGGGTGACATTCAATAATAAGCATTTTGATTTACCTCCTTGGTCTATAAGCATCCTTCCTGATTGCAAAACTGATGTATTTAATACAGCAAAAGTGAGAGTTCAAACATCACAGGTGAAAATGCTTCCTGTCAATACTAAGATGTTCTCATGGACGAGCTATGATGAAGATCTATCTTCCCTGGCTGAAAGTTCAAGGATTACATCTCCTGGACTTCTAGAACAGCTGAACGTTACTAGAGACACCAGCGACTATCTATGGTACATAACCAGTGTTGACATAAGTTCATCAGAATCATTTCTTCGAGGAGGACAAAAGCCCAGCATTAATGTGCAGTCTGCAGGACATGCTGTTCATGTGTTTGTTAATGGGAAATTTTCAGGGTCGGCTTTTGGGACAAGGGAACGGAGAAGTTGCACATTTAATGGACCAGTCAACCTCCACCCTGGAACAAATAAAATTGCACTTCTCAGTGTAACTGTTGGATTACCGAATGTTGGTCGGCATTATGAAACATGGGACACAGGGATCACTGGTCCAGTTTTGCTCCATGGTCTTGACCACGGACAGAAAGATTTGACGTGGAACAAGTGGTCATACAAGGTTGGTCTAAGAGGAGAGGCTATAAATTTGGTGTCTCCCAATGGGGTCTCGTCTGTTGATTGGGTCCAAGAGTCACTAGCTTCTCAAAGCCGGTCGCAATTGAAATGGTACAAGGCTTATTTTGACGCACCCGGGGGAAACGAACCACTGGCTTTGGACTTGGAAAGCATGGGTAAGGGTCAAGTATGGATCAATGAACAGAGCATAGGAAGATATTGGATGGCTTATGCAAAGGGTGACTGTAACTCTTGCCCTTACTCTGGGACCTTCCGTCCTGTAAAGTGCCAACTTGGTTGTGGACAACCCACTCAACGATGGTATCACATTCCAAGGTCATGGCTAAAGCCAACAAAGAACTTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAAATATCATTGGTAAAGAGAATGGTACATACTCGTGGGTAG 2205 0.4413 MATITNSVSKLLTLFFTVLFVGSKLIHCNVTYDRKALLINGQRRVLISGSIHYPRSTPDMWEDLMQKAKHGGLDVIDTYVFWDVHEPSPGNYNFEGRYDLVRFIKTVQKVGLYANLRIGPYVCAEWNFGGIPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVRMMQSEKLFQSQGGPIILSQIENEYGPESRAMGGAGRAYVNWAARIAVGLGTGVPWVMCKENDAPDPVINSCNGFYCDDFSPNKPYKPSMWTESWSGWFTEFGGPIHQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKELHKAIKRCEHALVSSDPTVASLGTLQQAHVFSSGAGACAAFLANYNAQSAARVTFNNKHFDLPPWSISILPDCKTDVFNTAKVRVQTSQVKMLPVNTKMFSWTSYDEDLSSLAESSRITSPGLLEQLNVTRDTSDYLWYITSVDISSSESFLRGGQKPSINVQSAGHAVHVFVNGKFSGSAFGTRERRSCTFNGPVNLHPGTNKIALLSVTVGLPNVGRHYETWDTGITGPVLLHGLDHGQKDLTWNKWSYKVGLRGEAINLVSPNGVSSVDWVQESLASQSRSQLKWYKAYFDAPGGNEPLALDLESMGKGQVWINEQSIGRYWMAYAKGDCNSCPYSGTFRPVKCQLGCGQPTQRWYHIPRSWLKPTKNLIVVFEELGGNPWKISLVKRMVHTRG 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00328 734 SUPERFAMILY Galactose-binding domain-like 404 575 IPR008979 -
Cca07g00328 734 PANTHER BETA-GALACTOSIDASE RELATED 3 732 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 Pfam Glycosyl hydrolases family 35 37 341 IPR031330 -
Cca07g00328 734 Gene3D - 598 733 - -
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 40 57 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 61 79 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 116 135 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 173 188 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 309 325 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 621 635 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Cca07g00328 734 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 175 187 IPR019801 GO:0004553|GO:0005975
Cca07g00328 734 Gene3D - 440 587 - -
Cca07g00328 734 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
Cca07g00328 734 Gene3D Glycosidases 26 345 - -
Cca07g00328 734 SUPERFAMILY Galactose-binding domain-like 583 730 IPR008979 -
Cca07g00328 734 Pfam Beta-sandwich domain in beta galactosidase 349 420 IPR041392 -
Cca07g00328 734 PANTHER BETA-GALACTOSIDASE 3 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00328 Cca-Chr7 4361019 4366264 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00328 07 4361019 4366264 Cca06g01301 06 27750691 27756572 ECH
Cca07g00328 07 4361019 4366264 Cca07g00328 07 4361019 4366264 ECH
Cca05g00319 05 6718878 6724593 Cca07g00328 07 4361019 4366264 PCT