Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00327 ATGGCGGAAGAGGGACAAGTGATCGGTATCCACAGCATCGATGCGTGGAAGGAACAACTCGAGAAGGGAGTTCAAACCGGCAAACTGATTGTGGTGGATTTTACTGCTTCTTGGTGCGGCCCATGCCGTTTCATTGCTCCAATTCTGGCTGAGATTGCTAAAAAGACGCCTGAAGTCACCTTCCTCAAGGTGGATGTGGATGAATTGAATCCTATTTCCGAGGAGTGGCGTGTTGAGGCTATGCCAACCTTCCTGTTCTTGAAAGGGGGCAGGGAAGTGGACAGGGTTGTCGGTGCCAAGAAAGAGGATCTGCAAAATGCAATAACCAAACATGCTACCATTACCGCTGCTGCTTGA 357 0.4986 MAEEGQVIGIHSIDAWKEQLEKGVQTGKLIVVDFTASWCGPCRFIAPILAEIAKKTPEVTFLKVDVDELNPISEEWRVEAMPTFLFLKGGREVDRVVGAKKEDLQNAITKHATITAAA 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00327 118 TIGRFAM thioredoxin: thioredoxin 18 111 IPR005746 GO:0015035
Cca07g00327 118 CDD TRX_family 18 108 - -
Cca07g00327 118 PRINTS Thioredoxin family signature 30 38 - -
Cca07g00327 118 PRINTS Thioredoxin family signature 38 47 - -
Cca07g00327 118 PRINTS Thioredoxin family signature 77 88 - -
Cca07g00327 118 ProSitePatterns Thioredoxin family active site. 31 49 IPR017937 -
Cca07g00327 118 SUPERFAMILY Thioredoxin-like 5 111 IPR036249 -
Cca07g00327 118 Pfam Thioredoxin 15 109 IPR013766 -
Cca07g00327 118 ProSiteProfiles Thioredoxin domain profile. 1 113 IPR013766 -
Cca07g00327 118 Gene3D Glutaredoxin 1 116 - -
Cca07g00327 118 PANTHER THIOREDOXIN 1 113 - -
Cca07g00327 118 PANTHER THIOREDOXIN 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00327 Cca-Chr7 4352773 4354710 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00327 07 4352773 4354710 Cca07g00327 07 4352773 4354710 ECH
Cca05g00321 05 6759346 6761015 Cca07g00327 07 4352773 4354710 PCT