Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00323 ATGAAATCAGGCATGGGGATTGAGGAGAGGAAGCAGTTGAAGAAACCAGCACAGGCCAGCTCGAGAAAGGGGTGCATGAGAGGTAAAGGTGGACCTGAGAACGCGAGTTGCACCTACAAAGGTGTGAGGCAGAGAACATGGGGCAAATGGGTCGCTGAAATACGCGAACCCAACCGTGGTGCTCGCATCTGGCTCGGGACATTTGAGACCTCTCATGAGGCTGCTCGGGCTTATGATGCTGCTGCACTCAAGCTTTATGGCTCAGACGCCAAGCTCAATTTACCAGACCTCTTTACCAAACCTCAATGTCACTCTCAATTTCCTCCTTCTccaccaccaccacctccaccaccTTCTGCTGCTATCTCTCAAGTGGAGAACCTGCAGCATTCCCAGATTGAAGACAACATAGACATGTACCCTTGTTCCAATTTCAACGGCCACCCTCCAGTCACCATGGCCTCTCAGCAGGTCGGAGTTGAACCAATTTACACCAGTGACTCCATTATGTCTCTTCCCTTGGACACCGATCCTAAGCCTGTTGAAACCTATCCAAAACCTGTGTGGGGAACCATGAACGAGGGTTTGCCAGTTTTCGATGATTCTATCTGGACAGAAGCTGCTATGTCCCTTGATTTCCCTCTACTTGCTGCAGAGACTGAGATTTACGCATTGGAGAACATGGCTGAGGTTATGCAATCTCCATGGTGCATGTAA 717 0.4798 MKSGMGIEERKQLKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARIWLGTFETSHEAARAYDAAALKLYGSDAKLNLPDLFTKPQCHSQFPPSPPPPPPPPSAAISQVENLQHSQIEDNIDMYPCSNFNGHPPVTMASQQVGVEPIYTSDSIMSLPLDTDPKPVETYPKPVWGTMNEGLPVFDDSIWTEAAMSLDFPLLAAETEIYALENMAEVMQSPWCM 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00323 238 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 MobiDBLite consensus disorder prediction 1 37 - -
Cca07g00323 238 MobiDBLite consensus disorder prediction 1 16 - -
Cca07g00323 238 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Cca07g00323 238 MobiDBLite consensus disorder prediction 98 121 - -
Cca07g00323 238 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 225 - -
Cca07g00323 238 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Cca07g00323 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 13 225 - -
Cca07g00323 238 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Cca07g00323 238 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00323 Cca-Chr7 4322356 4323774 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca07g00323 AP2 6.9e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00323 07 4322356 4323774 Cca07g00323 07 4322356 4323774 ECH
Cca05g00323 05 6783949 6785703 Cca07g00323 07 4322356 4323774 PCT