Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00317 ATGGCTGATTCAGCCTCAGCCTCTTCCGGGAGAATGTGGTGCTCCATCCCCGAACGGCTTCAGCTGCATGCGGCCATGTTGGCCCTGCAGTTTGGCTATGCCGGCTTCCATGTCGTCTCAAGAGCTGCCCTTAACATGGGCATTAGCAAACTCGTTTTCCCAGTCTACCGCAACATCATTGCTTTTCTCCTTCTAGTTCCCTTTGCATACTTCTTGGAAAAGAAGGAGAGGCCTGCCATTACTTTAAACTTCCTCTTACAGTTCTTTCTTCTGGCGCTTGTCGGGATTACTGCAAACCAAGGTTTCTACTTGCTTGGCTTGGACAACACATCCCCAACCTTTGCATCAGCAATTCAGAACTCTGTCCCAGCCATTACATTTCTCATGGCAGCCATACTGAGGATAGAGCAAGTGAGGCTGAACCGAAAGGATGGGATAGCAAAGGTGGCGGGAACAATATTCTGTGTTGCTGGGGCAACGGTGATCACACTATACAAGGGTCCAACAATTTATAGCCCGAGTCCACATCTAAACAGCCCAGTAATTGAGTTTGGCACACTCTCACTGGGAGATGCAAAGGGCAAGAACTGGACCCTTGGTTGCCTCTACCTCATAGGGCATTGCTTGTCTTGGTCTGGTTGGCTTGTGTTGCAAACACCTGTACTCAAGAAGTACCCAGCTCGCCTTTCTGTCACTTCCTATACATGCTTCTTTGGACTCATCCAATTCCTAGTCATTGCTCTTATTGTTGAAAGAGATGCTCAGGCTTGGATTTTCCACTCTGGTGGAGAAGTATTCACAATTTTCTATGCGGGAGTGGTGGCATCCGGAATTGCCTTCGCTGTACAGATATGGTGCATTCACAGAGGTGGCCCTGTGTTCGTTGCCGTGTATCAACCTGTTCAAACTCTTGTTGTCGCTATTATGGCTTCACTTGCTTTAGGCGAAGAGTTCTACTTGGGCGGGATCATTGGAGCAGTTTTGATAGTTGTGGGACTGTACTTTGTCTTGTGGGGTAAAAACGAAGAACAGAAATTTGCAAAGGAACAGGTTGCAATTACGACCACCCCAGAGCATAGCAGCATCAGATCCTCAAGCCATGCCAAAACATCACTCACTCAGCCTCTTCTCCCTTCTTCCACGGAGAATGTGTGA 1155 0.4814 MADSASASSGRMWCSIPERLQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIAFLLLVPFAYFLEKKERPAITLNFLLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAILRIEQVRLNRKDGIAKVAGTIFCVAGATVITLYKGPTIYSPSPHLNSPVIEFGTLSLGDAKGKNWTLGCLYLIGHCLSWSGWLVLQTPVLKKYPARLSVTSYTCFFGLIQFLVIALIVERDAQAWIFHSGGEVFTIFYAGVVASGIAFAVQIWCIHRGGPVFVAVYQPVQTLVVAIMASLALGEEFYLGGIIGAVLIVVGLYFVLWGKNEEQKFAKEQVAITTTPEHSSIRSSSHAKTSLTQPLLPSSTENV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00317 384 PANTHER WAT1-RELATED PROTEIN 14 352 IPR030184 GO:0016021|GO:0022857
Cca07g00317 384 Pfam EamA-like transporter family 199 337 IPR000620 GO:0016020|GO:0016021
Cca07g00317 384 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Cca07g00317 384 PANTHER WAT1-RELATED PROTEIN 14 352 - -
Cca07g00317 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cca07g00317 384 MobiDBLite consensus disorder prediction 358 384 - -
Cca07g00317 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00317 Cca-Chr7 4261424 4264471 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00317 07 4261424 4264471 Cca07g00317 07 4261424 4264471 ECH
Cca05g00326 05 6860032 6863537 Cca07g00317 07 4261424 4264471 PCT