Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca07g00307 | ATGAAGATCCAGTGCGACGTCTGTACCAAACACCACGCCACCTTCTTCTGCTCCGCCGACGAAGCCGCCCTCTGCGACGCCTGTGACCACCGCGTCCACCACGCCAACACCCTCGCCTCCAAACACCAACGCTTCTCTCTCACCTACCCCTCCACCAACCATCATCTTCCTCTCTGCGATGTGTGTCAGGAGAGAAGAGGCTTCGTGTTTTGTCAAGAAGACAGAGCCATTCTGTGCAGAGAGTGCGACGTTCCCATTCATTCCGCTAACGAACTCACTAAGAACCATAACAGGTTTCTTCTCACTGGGATCAAGTTcactgccactgccactgccactgccatgccTTATTCACAATCACCACCCAACAAAAACCATTCTGCCGAAACAAATGAACAAGTTGGTAGCAGCATATCAGAGTACTTGATCAACACTATCCCCGGCATGAAGTTCGAGGATTTCCTAGATTCACATACGCTTCCCTTTCCTTACTCCAACAATGGTGATGACATGTTTGGGAAGGGAAACATGGTTTCTTTCTCATGTGGTGGGATGTGGGTTCCTGAAGAGCAGAATGGGATGGCAAAGGATGGATTTGGCAACAGTTTCGGTTTGGGGGATGATAATTTCATTGTTCCACAATTGAATCCTCCTCCTCCTCCTAACAATGTGTACAAGAGATCCAGGCTTCAATGGTAA | 699 | 0.4649 | MKIQCDVCTKHHATFFCSADEAALCDACDHRVHHANTLASKHQRFSLTYPSTNHHLPLCDVCQERRGFVFCQEDRAILCRECDVPIHSANELTKNHNRFLLTGIKFTATATATAMPYSQSPPNKNHSAETNEQVGSSISEYLINTIPGMKFEDFLDSHTLPFPYSNNGDDMFGKGNMVSFSCGGMWVPEEQNGMAKDGFGNSFGLGDDNFIVPQLNPPPPPNNVYKRSRLQW | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca07g00307 | 232 | Gene3D | Classic Zinc Finger | 1 | 131 | - | - | |
| Cca07g00307 | 232 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 1 | 170 | - | - | |
| Cca07g00307 | 232 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cca07g00307 | 232 | ProSiteProfiles | Zinc finger B-box type profile. | 54 | 101 | IPR000315 | GO:0008270 | |
| Cca07g00307 | 232 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
| Cca07g00307 | 232 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
| Cca07g00307 | 232 | CDD | Bbox1_BBX-like | 58 | 101 | - | - | |
| Cca07g00307 | 232 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 170 | - | - | |
| Cca07g00307 | 232 | SMART | bboxneu5 | 3 | 47 | IPR000315 | GO:0008270 | |
| Cca07g00307 | 232 | SMART | bboxneu5 | 54 | 101 | IPR000315 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca07g00307 | Cca-Chr7 | 4060472 | 4062151 | Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Others | Cca07g00307 | zf-B_box | 2.8e-05 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g00331 | 05 | 7134159 | 7135833 | Cca07g00307 | 07 | 4060472 | 4062151 | PCT |