Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00297 ATGTCACCTTCACTTTCCCTCCTAATTATTCCTCTTCTCATTTTTCACATGGTGGCGGCGGCCACCGGGACCGGCAAGGGGCAGTGGCAGCTCCTCCACAAAAACATCGGCATTGTTGGCATGCACATGCAACTCCTCCACAACGACCGCGTCATCATGCTCGACCGCACCGACTTCGGCTTCTCCAACCTAACCTTCCCCAACAGCAAGTGCCGCACAAACCCACGCGAGATGGTCGTCAAAACCGACTGCACCGCTCACTCCCTCGAATACGACGTCGCAGCCAACACATGCCGCGCCCTCTTCGTCCAAACCAACGTCTGGTGCTCCTCCGGTTCACTCTCCCCCGACGGAACACTCGTCCAGACCGGCGGCTTCAACGACGGCGACCGCGCCGTCAGAACCTTCACCCCGTGCGCGACCTGCGACTGGCGGGAAATCAACGCCGGACTCGCCGCCAGACGATGGTACGCCACCAATCACATCCTGCCAGATGGACGCCAAATAGTAATCGGCGGAAGAAGACAATTCAACTACGAGTTTTACCCCAAGACAAAAGCTGCTGAAAACACTTACAGTTTACCTTTCCTCGTACAAACCAACGACGCCATTGCTGAAAACAACCTTTATCCCTTCGTTTTCTTAAACGTCGATGGCAACCTCTTTATCTTCGCCAACAACCGCGCTATCTTATTCGATTACAATAAGAACCGTGTCGTCAGAACGTATCCTCAAATACCAGGTGGAGATCCACGGTGTTACCCCAGCACCGGTTCTGCTGTGTTGCTCCCTCTCAGAAACTTACACGCGCCCAATGTAGAAGCTGAGGTCTTAATTTGCGGTGGAGCCCCGCGAGGGGCTTTTCAGCAAACTATCTCGGGTCGTTTTACTGGAGCGTTGAAAACGTGCGCTCGGATTAAAATAACCGACCCGAACCCGACTTGGGCCATGGAAACCATGCCGGGTGCGAGAGTCATGAGCGACATGGTTTTGCTCCCAAACGGTAACGTTTTAATCATTAACGGCGCAGCCGTGGGGACTGCAGGCTGGGAAATGGGCCGCAACCCGGTTTTAAGCCCGTTTGTTTACAAACCGAAGAACCGGGTCGGGTCACGATTTGAAGTCCAAAGCGCGTCTAATATTCCGCGAATGTACCACTCGAGTGCCGTTTTGCTTCGCGACGGTCGCGTTCTTGTGGCGGGGAGCAACCCTCACACTTACTACAATTTCAGCAACGTGTTGTTTCCAACGGAATTGCGGTTGGAGGCGTTTTCTCCTTCGTATCTGGAGGCTGGATTCTCTAGTGTGCGTCCCAGCATAGTGTCTCCTGCGTCCCAAACGAAAGTCAAGTACGGTGAGGCGTTGAAGGTGCGGTTCCAAGTGAAGGGAAGTTTGGCTCGGGGTGCGGTGTCGGTGACGATGGTGGCGCCGCCTTTTACGACGCACTCGTTCGCCATGAATCAGAGGGTGCTGGTGCTGGAGGCGCAGGATCTGAGGGAGGTTGCGAAATGGACGTACGAGGTTGGAGTTACTGCTGCCGGTTCGGCTGTTCTTGCACCTCCCGGTTTCTATCTACTGTTTGTGGTCCATCAAGAAATTCCAAGCCACGGCATTTGGGTCCGGATGGTGTGA 1632 0.5453 MSPSLSLLIIPLLIFHMVAAATGTGKGQWQLLHKNIGIVGMHMQLLHNDRVIMLDRTDFGFSNLTFPNSKCRTNPREMVVKTDCTAHSLEYDVAANTCRALFVQTNVWCSSGSLSPDGTLVQTGGFNDGDRAVRTFTPCATCDWREINAGLAARRWYATNHILPDGRQIVIGGRRQFNYEFYPKTKAAENTYSLPFLVQTNDAIAENNLYPFVFLNVDGNLFIFANNRAILFDYNKNRVVRTYPQIPGGDPRCYPSTGSAVLLPLRNLHAPNVEAEVLICGGAPRGAFQQTISGRFTGALKTCARIKITDPNPTWAMETMPGARVMSDMVLLPNGNVLIINGAAVGTAGWEMGRNPVLSPFVYKPKNRVGSRFEVQSASNIPRMYHSSAVLLRDGRVLVAGSNPHTYYNFSNVLFPTELRLEAFSPSYLEAGFSSVRPSIVSPASQTKVKYGEALKVRFQVKGSLARGAVSVTMVAPPFTTHSFAMNQRVLVLEAQDLREVAKWTYEVGVTAAGSAVLAPPGFYLLFVVHQEIPSHGIWVRMV 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00297 543 Gene3D Immunoglobulins 436 543 IPR013783 -
Cca07g00297 543 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 19 542 - -
Cca07g00297 543 Gene3D - 23 435 IPR037293 -
Cca07g00297 543 CDD E_set_GO_C 432 542 IPR015202 -
Cca07g00297 543 SUPERFAMILY E set domains 433 542 IPR014756 -
Cca07g00297 543 SUPERFAMILY Galactose oxidase, central domain 90 430 IPR011043 -
Cca07g00297 543 Pfam Glyoxal oxidase N-terminus 41 282 IPR009880 -
Cca07g00297 543 Pfam Galactose oxidase-like, Early set domain 437 541 IPR015202 -
Cca07g00297 543 PANTHER SECRETED PROTEIN-RELATED 19 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00297 Cca-Chr7 3915226 3917137 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00297 07 3915226 3917137 Cca07g00297 07 3915226 3917137 ECH
Cca05g00337 05 7275757 7277860 Cca07g00297 07 3915226 3917137 PCT