Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00296 ATGAATAAGTCAActtttcttcttcttgtttctcttctaccttccatcttcttcctcctctCGGGAGCTTCCAACGGCCAGTGGCAGCTCCTACAAAAGAGCATAGGCGTAGTGGCCATGCACATGCAGCTTCTGAACAACGACCGAGTCATCATCTACGACCGCACCGACTTCGGCCTATCCAACCTAACCCTTCCCAGTGGCAAGTGTCGCTACGACCCCACCGAGATGGCTCTCAAAAAAGACTGCTCCGCTCACGCAGTCGAATACGACGTCGCATCCAACACCTTCCGTGCCCTCTTCATCCAAACCGACGTCTGGTGCTCCTCCGGCTCCGCCGTCGCAGACGGCACACTCATCCAAACCGGCGGCTACGGGGACGGCGAACGTAAAGTAAGGCACTTCGTTCCATGCGAAAACTGCGACTGCGACTGGCAAGAGATCGATAACGCCCTCCTCGTTAAACGATGGTACTCCACCAATGTGCACTTGCCTGATGGACGACAAATTATAATCGGAGGAAGAAGAGAGTTTAACTACGAGTTTCATCCTAAGACACACACTAAGCATAAAAGACCCTACTATTTACCTTTTTTGCTTCAAACCAATGATAAGGGCGTGGAGAACAACCTTTACCCGTTTGTTTTTTTAAACGTGGATGGAAATCTTTTCATTTTCGCTAACAACCGCGCCATTCTGTTTAACTACAAAAACCGTAGGGTATTGAGAACGTACCCAGAGATACCAGGAGGAGATCCTAGGTGTTATCCTAGTACAGGTTCCGCGGTTTTGCTTCCTTTGAGAAACTTAGAAGCAGCGACTGTCGAGGCTGAGGTTTTGATCTGCGGTGGGGCCCGCAGGGGGGCTTTTCAGCTTGTGCGCAAAGCTGTGTTCTCCCCAGCCATGGATTCTTGCGCCAGGATTAAGATTACCGATCCCAATGCCACGTGGACGGTCGAGACCATGCCCAGAGGGAGGGTCATGAACGACATGCTCATGCTCCCCAACGGCCGCGTTTTGATTATAAATGGAGCCTCATTGGGAGTGGCCGGGTGGGAGATGGGCAAAAACCCGGTTCTCGAACCGGTTATTTACAAACCAAACAGTCCGGTTGGCTCACGGTTCATCTTGCAAACCGCGAGTGATATTCCTAGGATGTATCACTCAACCGCGGTTTTGGTTCGCGATGGAAGGGTTATCGTTGGTGGCAGCAACCCTCACGAGAAGTATCGATTTTTTAACGTGACATATCCTACGGAGTTGAGGTTAGAGGCGTTTTGGCCTTACTATTTGGACGCACAGTATGCTAACGTGCGTCCGATGATTGTAGAGCCTGTTTCGCATGCCAATGTGACGTATGGTGAAAAGTTTAAGATGAGTATCAAGGTGAATGGGACGGTCGTGCCCGAGTTGTTGACGGTTACGATGCTGGCGCCGCCGTTTAACACGCACTCTTTCTCCATGAATCAGAGGCTGCTGGTGTTGTCCATTGGAAAGCTTAATGTTGGTGGAAAATCGAGTTGTGAATTTGAGGTGACGGCGCCGGCTTCCGCCGTGCTTGCACCACCCGGGTTTTATTTGCTATTTGCGGTTCATCAAGATATTCCCAGCGAGGGAATTTGGATCAAGATACAGTGA 1638 0.4921 MNKSTFLLLVSLLPSIFFLLSGASNGQWQLLQKSIGVVAMHMQLLNNDRVIIYDRTDFGLSNLTLPSGKCRYDPTEMALKKDCSAHAVEYDVASNTFRALFIQTDVWCSSGSAVADGTLIQTGGYGDGERKVRHFVPCENCDCDWQEIDNALLVKRWYSTNVHLPDGRQIIIGGRREFNYEFHPKTHTKHKRPYYLPFLLQTNDKGVENNLYPFVFLNVDGNLFIFANNRAILFNYKNRRVLRTYPEIPGGDPRCYPSTGSAVLLPLRNLEAATVEAEVLICGGARRGAFQLVRKAVFSPAMDSCARIKITDPNATWTVETMPRGRVMNDMLMLPNGRVLIINGASLGVAGWEMGKNPVLEPVIYKPNSPVGSRFILQTASDIPRMYHSTAVLVRDGRVIVGGSNPHEKYRFFNVTYPTELRLEAFWPYYLDAQYANVRPMIVEPVSHANVTYGEKFKMSIKVNGTVVPELLTVTMLAPPFNTHSFSMNQRLLVLSIGKLNVGGKSSCEFEVTAPASAVLAPPGFYLLFAVHQDIPSEGIWIKIQ 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00296 545 Gene3D - 22 437 IPR037293 -
Cca07g00296 545 PANTHER OXIDASE, PUTATIVE, EXPRESSED-RELATED 20 545 - -
Cca07g00296 545 Pfam Galactose oxidase-like, Early set domain 439 544 IPR015202 -
Cca07g00296 545 PANTHER SECRETED PROTEIN-RELATED 20 545 - -
Cca07g00296 545 SUPERFAMILY Galactose oxidase, central domain 87 431 IPR011043 -
Cca07g00296 545 Gene3D Immunoglobulins 438 545 IPR013783 -
Cca07g00296 545 CDD E_set_GO_C 435 544 IPR015202 -
Cca07g00296 545 Pfam Glyoxal oxidase N-terminus 40 284 IPR009880 -
Cca07g00296 545 SUPERFAMILY E set domains 435 544 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00296 Cca-Chr7 3904003 3905792 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00296 07 3904003 3905792 Cca05g00337 05 7275757 7277860 PCT