Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00286 ATGGATCGACGCTGGCCTTGGAAGAAAAAATCATCGGAGAAGTCTGTGATTGAGAAAGCAGCTACTGCATTGGATTCCTCCGATGCTTCCAACAACCAGGAAACCAACAAGAAACCGAACTACATCCAAATCTCTGTGGAATCTTATTCACATCTATCTGGTTTGGAGGATCAAGTGAAGACATATGAGGAAAAAGTTCAGACATATGAGGAAAAAGTTCAGACTCTAGAGGATGAGGTTAAGGAAATGAATGAAAAGCTGTCAGCAGCAAACTCTGAGATCAATACCAAGGAAAGCATGGTAAAACAACATGCTAAAGTAGCTGAAGAAGCTGTATCAGGCTGGGAAAAGGCTGAGGCTGAAGCTTTGGCATTGAAGAACCATCTAGAATCTGTTACTCTTTCAAAACTCACAGCTGAGGATCGCGCTACACATTTGGATGGTGCTCTTAAAGAGTGTATGCGACAAATTCGAAACCTTAAGGAAGAACATGAACAGAAAATACAGGAAGTTGCTCTCTCAAAAACCAAGCAATTAGACAAGATTAAGGGGGAGCTTGAGGCAAAAATAGTAAACTTTGAGCAGGAACTTCTTAGGTCTGCTGCTGAAAATGGGGCCCTGTCAAGGTCATTGCAAGAGCGCTCCAACATGCTAATGAAACTAAGCGAAGAAAAGGCTCGTGCTGAGGCTGAAATCGAGCTTCTTAAGGGCAACATAGAAGCATGTGAAAGGGAAAATAATTCACTTAAGTATGAACTTCATGTTGTTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCATATGGAGGGTGTAAAAAAAATTGCTAAGTTAGAGGCTGAGTGCCAAAGATTACGTGGTCTTGTGAGGAAAAAGTTACCTGGTCCTGCTGCACTTGCACAGATGAAGCTAGAAGTTGAAAACCTTGGCCGAGATTTTGGAGAAAGTCGATTAAGGAAGTCACCTGTTAAGCCTGCTAGCCCTAATTTGTCTTCATCACCCGATTTCTCTGTTGAAAGTGTACAGAAATTCCAGAAGGACAATGAATTTCTTACAGAGCGTTTGTTGGCAATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTAGCTAAACGTAACAGTGAATTGCAGGCCTCAAGGAGTATGTGTGCTAAAACACTGAGCAAACTTCAAAGTTTGGAAGCACAATTTCAGACAGGTAACCAGCTGAAAGGATCTCCAAAATCCATCATCCAGATAACTCATGAAAGCATTTATAATCAAAGCGCAAGCGATGCACCAAGCTTAGTCTCCATGTCTGAAGATGGAAACGATGATGCAGTAAGTTGTGCTGAATCTTGGTCTACAGCAATCGTCTCTGGGACATCCCAGTTCTCTAAAGAAAAATGCACTGAGGAATCAAGCAAGTCTGAAGCTACTAAGAAGTTGGAACTAATGGATGACTTTCTGGAGGTGGAGAAGTTGGCTCGTTTGTCAAATGATTCCAACGTGGATGCCACTGTTTCAGTTTCTTCAAACAATAAGACAACAGACATTGTGACTGACAATGTATCAGAAATTAGTACCGGCAAAGATGGTCTGTCTGAAAAAAATGGAAATTCAGATCCATTGCCAAATCAAGTGTCTTCTGATCCTCAATCTGATGTTGGTCGCTTGTTATTGACAGAACTTAGATCAAGAATATTACTGGTTTTTGAGTCCTTAGCTAAGGATGCTGACATAGGGAAGATTGTGGAGGATATTAAACATGTGCTTGAAGATTCTCATGACACTACCAACCACGATTCTAAGGATGCCCATCCTTCTAATGTTACATGTGATAGGAAGGATAATCCGGAAGATGCTGGCATAAACCTTGAAAATAAAACCGTGTCATCCCAGCAACCCAAAGAATATGTGCAGATAACTTCAGATTTGGAAGCTGCGATTTCTCAGATTCATGACTTTGTAATGTTCCTTGGGAAGGAAGCAAGGACATTTCATGGTGTATCATCTGATGCAAACGAAATGAGGCTAAAGATTGAGGAGTTCTCTGTCACATTTAATAAAGTATTATGCAACAATGCAAGTTTACTACAGTTTGTTCTTGACTTGTCCTATGTTCTAGATAAAGCAAGTGAATTCAGATTTGATGTCCTTGGCTACAAGGGCACAGAAGCTGAAACTAACAGTCCTGATTGCATAGATAAGATTGCTTTGCCTGAAAATAAGTTAGTAGAAGACAATGCATCTGGAGAAAGATATCAAAATGGTTGTTGCCATGTTCTTAATCCGTGTTCTAACCCTGAGGTCCCCGATGATGGAAATTTGGCCTCAGGCTATAAAGCGGATGCTGCACCACGGAAGCTGTCAATAGAAGAGTTTGAAGAATTGAAACTAGAGAAAGATAAAGTGGTGATTGATCTGTCAAATTGTACTGAAAATCTTGAAATGAAAAAGTCTCAATTGCTTGAGACTGAGCAACTTCTAGCTGAAATTAGATCACAATTGGCTTCTGCTCAAAACTCAAACAGTTTGGCTGAGACACAGCTAAAGTGCATGGCAGAATCATACAAGTCACTTGAAACACGTTCCCAGGACTTGGAAACTGAGCTAAACCGTCTGCAAATCAAGATAGAATCTCTAGAGAATGAACTTCAAGACGAAAAGAGGGCTCATGAAATGGCTTTGGTCAGGAGCAAGGATCTAGAAGAGCAGTTACAAAGGATTGAGTGCTCGGCAGCTGATAATGACGTCAAGACTTCTCATGATAAAGATTTGGCATCTGCTGCTGAAAAGCTAGCCGAGTGTCAAGAAACCATATTTCTTCTGGGCAAGCAGCTAAATGCTCTACGTCCACAAACTGACCCAATTGACTCATCATACAGTAAGATAACTCCAAAGGATGAAGGCTTCACAGAAGAGGAAGCTACCACTAATAGCCCAAAATTTCAAGAATTGGGTCAGTCGGAGTTGGATAATGCTACTTCTGCATTTGTGCAAAGATTGAGTTCGGAGTCTCCCTTGCATTTTTCCAACAGTTTATTTAGCCCATCAGATAGCGAGTCCACCCTTCCAGCCAGATCCCCAGTACAGCATTCTAAAACAAAACCCAAACACAGGCCTACCAAGTCAGCCTCTTCTTCAGCTTCCTCTGCCACTACACCTGATAAACATGCACGGGGATTCAGTAGATTCTTTTCACCAAAAGGAAAAGCTGGTCATTGA 3246 0.4122 MDRRWPWKKKSSEKSVIEKAATALDSSDASNNQETNKKPNYIQISVESYSHLSGLEDQVKTYEEKVQTYEEKVQTLEDEVKEMNEKLSAANSEINTKESMVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLSKLTAEDRATHLDGALKECMRQIRNLKEEHEQKIQEVALSKTKQLDKIKGELEAKIVNFEQELLRSAAENGALSRSLQERSNMLMKLSEEKARAEAEIELLKGNIEACERENNSLKYELHVVSKELEIRNEEKNMSMRSAEAANKQHMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVENLGRDFGESRLRKSPVKPASPNLSSSPDFSVESVQKFQKDNEFLTERLLAMEEETKMLKEALAKRNSELQASRSMCAKTLSKLQSLEAQFQTGNQLKGSPKSIIQITHESIYNQSASDAPSLVSMSEDGNDDAVSCAESWSTAIVSGTSQFSKEKCTEESSKSEATKKLELMDDFLEVEKLARLSNDSNVDATVSVSSNNKTTDIVTDNVSEISTGKDGLSEKNGNSDPLPNQVSSDPQSDVGRLLLTELRSRILLVFESLAKDADIGKIVEDIKHVLEDSHDTTNHDSKDAHPSNVTCDRKDNPEDAGINLENKTVSSQQPKEYVQITSDLEAAISQIHDFVMFLGKEARTFHGVSSDANEMRLKIEEFSVTFNKVLCNNASLLQFVLDLSYVLDKASEFRFDVLGYKGTEAETNSPDCIDKIALPENKLVEDNASGERYQNGCCHVLNPCSNPEVPDDGNLASGYKADAAPRKLSIEEFEELKLEKDKVVIDLSNCTENLEMKKSQLLETEQLLAEIRSQLASAQNSNSLAETQLKCMAESYKSLETRSQDLETELNRLQIKIESLENELQDEKRAHEMALVRSKDLEEQLQRIECSAADNDVKTSHDKDLASAAEKLAECQETIFLLGKQLNALRPQTDPIDSSYSKITPKDEGFTEEEATTNSPKFQELGQSELDNATSAFVQRLSSESPLHFSNSLFSPSDSESTLPARSPVQHSKTKPKHRPTKSASSSASSATTPDKHARGFSRFFSPKGKAGH 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00286 1081 Coils Coil 354 381 - -
Cca07g00286 1081 Coils Coil 143 203 - -
Cca07g00286 1081 PANTHER FILAMENT-PLANT-LIKE PROTEIN 1 1081 - -
Cca07g00286 1081 Coils Coil 822 912 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 1 16 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 1020 1037 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 527 559 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 24 39 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 959 990 - -
Cca07g00286 1081 Coils Coil 52 100 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 1049 1064 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 1020 1081 - -
Cca07g00286 1081 Pfam Filament-like plant protein, long coiled-coil 97 962 IPR008587 -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 602 628 - -
Cca07g00286 1081 MobiDBLite consensus disorder prediction 1 39 - -
Cca07g00286 1081 Coils Coil 211 294 - -
Cca07g00286 1081 SUPERFAMILY Tropomyosin 800 970 - -
Cca07g00286 1081 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00286 Cca-Chr7 3746593 3751489 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00286 07 3746593 3751489 Cca07g00286 07 3746593 3751489 ECH
Cca05g00351 05 7728531 7734543 Cca07g00286 07 3746593 3751489 PCT