Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00254 ATGCAGCAAGGAGACTACACCCCCACTCCCTATTACCAATTCCCACACCTCCAAAACCCTAACCCTTCTCCTTCCCCCTCCGATCCACTCCCCAATAACCCCTACGCCTCCGCACCTCCCTTCACCCCCAATTACGCTCCTTCCGATTACAACCCTTACCCTCAAAACCCCGATCCTATTCCACCCACTGCTCCCTCTGCCTCCAACCCTAATTTCCCCCCTTATTTCGAATCAAACCCTTCTTACCAACAACAGCCCTATTTCCCACCCTATGATCAGCATCAAACCGCTCCCAATTACGCCCCTCCCAACACCTCTTTATACAATTCCGCTCCCTACTCCCTCACCGCACCTTCCTCCGTTCCTCCAATTCCCACCTACGACCCTCCGCCCAGGCCCCAGCACGCCGCCGGCTACTTCGACGACAGGTACGGAGGCGGCACCTTTAATCGGACCCACTCCGATTTGGGATCCGATTATTACGGCAAGAGCGGTGGCGACGAGGGCTACGGAGACGGCGTCTATGCTTACGAAGGGGGCAAAGTCGAACCCTATGGGGCGCGCGGCACCGCGCCCAAATCCTCCACTTGGGCGGCGTTTGATGATTATGGGAGGTCCATTAGTTTTCCATCGCAGAAGGAATCTTCCGCTGGGGGTAAGATTGTGAAAGCGGTGCCCAAGGTTGATGCCCAGGAAGACGTGAAAGGTGGCGTGCAAAAGTTTCGTGTCAAGCTGTTGGCAGAAAGTGGGGGTCAGAGCACTATGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGAATGCTAGATCCAAATACCAGCCGGACTTTGAGAATATATCCTCTTGAGAACATAACAAGATGTGATAGATTCGATTCATCAACCTTTGCATTTTGGTCAAAGAGCCCCGTGGACATTGAGCCAAGGCGAATCAGATTGCAATCTAATAGTTACACTACTAATACACTTTTGGATACGGTGACTGCTGCAACCATACAGTTCAAGGAAATGGGTGGAAGCAAGAGGCCTGTTGAATCAGTGAAAATAAATGAACAGCTTGCAGAAAGAAAGAAAGGTTTTGGTGATTGGATGAATCTGATTAAACCTGCCAATGAAGAGAAGGATCATTGGGTACCAGATGAAGCTGTCTCAAAATGTACAGCATGTGGCACTGATTTTAGCGCTTTTGTTCGCAAGCACCACTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACACGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCTGTACGTGTGTGTGACCGTTGCATGGCGGAAGTGACGCAGCGTCTGACTAGTGCTAAAGAGTCATCAAGTAAACCTGCATTGCAGAGTCATGAGGATCTTGCCAAGAAACTTCAGGTGAATGATTTGTTAAGTGGTCTTTTTGTAGGTTCCAAGTCTGATGGATCTGCAAAACGAATGAAGGAAGTTGCATGTCCTATTTGCACTGTCCATCTACAGGTTCAGGTGCCTAGCTCTGGTTCAGAGACCATTGAGTGTGGAGTTTGCCAGAACCCATTTCTTGGTGTGGTGGAGCTTCCACCAAATGTTTCAATTCCAGCAGTGTTGGTGTTCGGAGATTCAATAATGGACACTGGGaacaacaacaacaacacacaaACACTTGCTAAGTGCAATTTTCCTCCTTATGGCAAAAATTTCAGAGGAGGCATCCCAACTGGTCGATTTGGTAATGGAAAGGTTCCATCAGATTTTGTTGCTGAAGAATTGGGCATTAAGGAACTTCTGCCAGCATTTTTGGATCCAAATCTCAAACCTAGTGATCTCGTCACTGGTGTTTGCTTTGCATCCGGTGGTTCAGGCTACGATCCTCTCACATCTAAACTAGCGGCAGCTATATCATTGTCTGGTCAAATCGACATGTTCAAAGAATACATAAGAAAGCTAAAAGGACTTGTTGGAGAGGACAGAACAAACTTCATCCTAGCCAATAGCATTGTTCTTGTTGTACAAGGTAGCAACGACATTTCCAACACCTACTTTTTGAGTCATGCTAGAGAAGTGCAATATGATATTCCTCATTACACTGACCTAATGGTCAACTCAGCTTCTAATTTCTTAGAGGAAATATATCAACTAGGTGCTCGGAGGGTAGGAGTATTCAGTGCTCCACCAATTGGGTGTGTGCCATTTCAGAGAACAATTCTTGGAGGAATAACTAGAAAATGTGCAGACAAGTACAATGATGCAGCCAAGTTATTCAACAGCAAACTATCCAACGTGATTTCTTCCCTTAACCGGAACTTGCCCAATGCCAGGATGGTTTATCTTGATGTTTACAACCCTCTACTCGATATCATTGTAAATTACCAAAATTATGGTTTTAAAGTGGGAGACAAAGGATGCTGTGGTACAGGAAAGATAGAGGCCGCAGTGTTCTGCAACCCTTTGGATGCCACGTGTCTGGATGTGGAAGACTACGTTTTTTGGGATAGTTTTCATCCTTCGGAAAATGTTTACAAAATGCTCGTACCTCCTGTTCTTCGAAAATATTTGTACCAGTTCCTCTGA 2571 0.4605 MQQGDYTPTPYYQFPHLQNPNPSPSPSDPLPNNPYASAPPFTPNYAPSDYNPYPQNPDPIPPTAPSASNPNFPPYFESNPSYQQQPYFPPYDQHQTAPNYAPPNTSLYNSAPYSLTAPSSVPPIPTYDPPPRPQHAAGYFDDRYGGGTFNRTHSDLGSDYYGKSGGDEGYGDGVYAYEGGKVEPYGARGTAPKSSTWAAFDDYGRSISFPSQKESSAGGKIVKAVPKVDAQEDVKGGVQKFRVKLLAESGGQSTMDVLCQIGLDGIRMLDPNTSRTLRIYPLENITRCDRFDSSTFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGGSKRPVESVKINEQLAERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFSAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAEVTQRLTSAKESSSKPALQSHEDLAKKLQVNDLLSGLFVGSKSDGSAKRMKEVACPICTVHLQVQVPSSGSETIECGVCQNPFLGVVELPPNVSIPAVLVFGDSIMDTGNNNNNTQTLAKCNFPPYGKNFRGGIPTGRFGNGKVPSDFVAEELGIKELLPAFLDPNLKPSDLVTGVCFASGGSGYDPLTSKLAAAISLSGQIDMFKEYIRKLKGLVGEDRTNFILANSIVLVVQGSNDISNTYFLSHAREVQYDIPHYTDLMVNSASNFLEEIYQLGARRVGVFSAPPIGCVPFQRTILGGITRKCADKYNDAAKLFNSKLSNVISSLNRNLPNARMVYLDVYNPLLDIIVNYQNYGFKVGDKGCCGTGKIEAAVFCNPLDATCLDVEDYVFWDSFHPSENVYKMLVPPVLRKYLYQFL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00254 856 SMART fyve_4 372 441 IPR000306 GO:0046872
Cca07g00254 856 Gene3D SGNH hydrolase 527 850 IPR036514 -
Cca07g00254 856 Pfam FYVE zinc finger 376 440 IPR000306 GO:0046872
Cca07g00254 856 MobiDBLite consensus disorder prediction 70 114 - -
Cca07g00254 856 PANTHER PROTEIN FREE1 1 521 - -
Cca07g00254 856 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 535 546 IPR008265 GO:0006629|GO:0016298
Cca07g00254 856 CDD FYVE_EEA1 377 439 - -
Cca07g00254 856 SUPERFAMILY FYVE/PHD zinc finger 375 447 IPR011011 -
Cca07g00254 856 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 380 440 IPR017455 -
Cca07g00254 856 MobiDBLite consensus disorder prediction 1 114 - -
Cca07g00254 856 Pfam GDSL-like Lipase/Acylhydrolase 535 842 IPR001087 GO:0016788
Cca07g00254 856 MobiDBLite consensus disorder prediction 119 138 - -
Cca07g00254 856 SUPERFAMILY PH domain-like 240 303 - -
Cca07g00254 856 PANTHER PROTEIN FREE1 1 521 IPR045893 GO:0036258|GO:0043130
Cca07g00254 856 CDD SGNH_plant_lipase_like 533 844 IPR035669 -
Cca07g00254 856 MobiDBLite consensus disorder prediction 15 69 - -
Cca07g00254 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 445 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00254 Cca-Chr7 3203620 3221005 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00254 07 3203620 3221005 Cca07g00254 07 3203620 3221005 ECH
Cca05g00390 05 8525935 8530837 Cca07g00254 07 3203620 3221005 PCT
Cca07g00254 07 3203620 3221005 Cca05g00388 05 8478213 8483413 PCT