Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00246 ATGGTTACCACCACAGTTGATTCTTCCTCTAATCATCACTCCCCCACTAGTGTTGCAGAAAACCCTAACTTCCCGCGAAAAAACCTGCCTTCACCGTGGGCCCAGGTTGTTCGCGGTGCTGATTCCGAGCCTAACCACCAATCGCCGCCTTCTTCTTCCTCTTCGTCGTCCCTTGATTCTGTTACTTCCAATGGGGCCTCTGCAGCCGTTGATGCCTGCGATGCTGCTGTGAAACCCGCATGGAAGAGACCCTCCAATGAGGTCGCGGATGTTGGGCCTGGGCCTGTAATGGGCGCTGTCTCTTGGCCCGCGTTGTCCGAGTCCACCAAGCCCGCTGCTAAATTAACATCTGAATCCTCTGCTAAGACTGCCACTGACGATGGGTCACTCACCACCCCTCAGGGGCCTGTTATTTCAGACTCCCCTCAGAAACAAGGTACTGGTAATGTGAAACCTAGTCCTGCAATGAACCATGGTATGGTTAATAGGCAAAGATCAATGAAGCGTGGAGGGGCTAATAGCAATAATGTTGTGCCTGGTCCTGCTCAGAACAACTTCTCTACACCTTCCCCAAATCTTTCTCCACCACCTCCACCACCCTTTCCTGTGCTTCAGATGCCTCCAAGTACATTTGCGCATGGGATACCAGGGGCTCCAGTTCCTATACCTAGGGATCCTTACAGGAATAATAACTGGGATACAAGGCCTCCACTTGGGGGTTTTATGCCGCCAATGAATGAGCATCGGAGTCCCTCTCGCAGGAGCAATGCCGGGCACCATCCGCGGGATGGTTCCTATCATAACAGTTATGGCAACAGGCGTGATCAGGATCGTGGGAGTTATGCAAATACTAGAGATACTCATGTAAATCAACAGAGGATACCTCCTAGGGGATTAATGAGGCCCCCACCACCTAATCCTGCTTCATTCATGGGGCCTCAGCCTATCCGTCCCTTTCCAAACCCTGCTGGTTTTCCTGAATTCTATTATTTCCCAACACTACAATTTGAATCCTTTGGGGGCATGCCATTCTTCACACATGCACCTCCGCCTGCAATGTTCTTCCCGGTTGCAGAAACTCCGCTCACCAATACAATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAAGGATGAGTATTTAAGGTCCAACATGGATGAACAGGGATGGGTTCCTATTACTTTGATTGCAAGCTTCCCACGTGTTAGAAGTTTGACAAGCAACATTAAACTGATACTGGATTCATTGAGAACTTCCACTGTCGTGGAAGTGCAGGCAAGTTAA 1296 0.4931 MVTTTVDSSSNHHSPTSVAENPNFPRKNLPSPWAQVVRGADSEPNHQSPPSSSSSSSLDSVTSNGASAAVDACDAAVKPAWKRPSNEVADVGPGPVMGAVSWPALSESTKPAAKLTSESSAKTATDDGSLTTPQGPVISDSPQKQGTGNVKPSPAMNHGMVNRQRSMKRGGANSNNVVPGPAQNNFSTPSPNLSPPPPPPFPVLQMPPSTFAHGIPGAPVPIPRDPYRNNNWDTRPPLGGFMPPMNEHRSPSRRSNAGHHPRDGSYHNSYGNRRDQDRGSYANTRDTHVNQQRIPPRGLMRPPPPNPASFMGPQPIRPFPNPAGFPEFYYFPTLQFESFGGMPFFTHAPPPAMFFPVAETPLTNTIVNQIDYYFSDANLVKDEYLRSNMDEQGWVPITLIASFPRVRSLTSNIKLILDSLRTSTVVEVQAS 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00246 431 MobiDBLite consensus disorder prediction 1 313 - -
Cca07g00246 431 MobiDBLite consensus disorder prediction 110 152 - -
Cca07g00246 431 MobiDBLite consensus disorder prediction 297 313 - -
Cca07g00246 431 MobiDBLite consensus disorder prediction 252 282 - -
Cca07g00246 431 Gene3D - 356 431 IPR036388 -
Cca07g00246 431 MobiDBLite consensus disorder prediction 190 206 - -
Cca07g00246 431 MobiDBLite consensus disorder prediction 1 24 - -
Cca07g00246 431 CDD LAM 366 429 - -
Cca07g00246 431 Pfam La domain 366 421 IPR006630 -
Cca07g00246 431 SMART la 360 431 IPR006630 -
Cca07g00246 431 MobiDBLite consensus disorder prediction 41 67 - -
Cca07g00246 431 PANTHER LA-RELATED PROTEIN 1B 8 429 - -
Cca07g00246 431 MobiDBLite consensus disorder prediction 167 189 - -
Cca07g00246 431 PANTHER LUPUS LA PROTEIN-RELATED 8 429 IPR045180 -
Cca07g00246 431 SUPERFAMILY "Winged helix" DNA-binding domain 353 429 IPR036390 -
Cca07g00246 431 ProSiteProfiles La-type HTH domain profile. 356 431 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00246 Cca-Chr7 3106472 3110762 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00246 07 3106472 3110762 Cca07g00246 07 3106472 3110762 ECH
Cca05g00397 05 8717792 8721994 Cca07g00246 07 3106472 3110762 PCT