Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00218 ATGGCGTTCGCCACCAGCGCGTTGCTCTCTTCAAACTTCATCGGAAGAAAGGTTCTAGTCCCAACCCCCAAAACAACAAAACCATCGACGCCGTTACCGTTACAGCAATTGAGGATACTAAACGCTGCTGCGAAGGAGAAGAAGTCACAAGTGAAATCGGCATCTTCAAAAGCAGCACTAGCGGCCCTAATCGTTTCCTCGGCGAGTCTGTCACCGCAAGCCCTGGGCGCTGATAACGTCACCCCAGCCCCAGCCCCAGCCCCACCGCCGGTAATCGAAGCGCAACAGACCCAATCAAACCCTTCCAACGCATCCTCCCCTTTCTCACAGAACCTCCTCATGACAGCGCCCAAGCCCCAAGCCTCCCCGGACCTCCCCGAAGGCACGCAGTGGCGCTACAGCGAGTTCCTCAACGCCGTCAAGAAGGGCAAAGTCGAGCGCGTCAGGTTCAACAAGGACGGCTCCGCCCTCCAGCTAACCGCCGTCGACGGCCGCCGCGCCTCCGTCATCGTCCCCAACGACCCCGACCTCATCGACATCCTCGCCATGAGCGGCGTCGACATCTCCGTCGCCGAGGCCGAGTCCGGCAACGGCCTCTTCAACATCATAGGCAActtgctcttccccttcctcgccttcgcgggcctcttcttcctcttccGCAGGGCCCAGGGCGGGCCCGGGGGGCCCGGGGGGCTCGGCGGGCCCATGGACTTCGGCCGGAACAAGTCCAAGTTCCAGGAAGTCCCCGAGACCGGCGTGACCTTCGGTGACGTGGCGGGCGCGGATCAAGCGAAGCTTGAGCTCCAAGAGGTTGTTGATTTTTTGAAGAATCCCGATAAGTACACTGCCTTGGGCGCAAAGATTCCGAAGGGGTGTCTTCTGGTGGGGCCGCCGGGGACGGGGAAGACGCTGCTGGCGAGGGCGGTGGCGGGGGAGGCCGGAGTGCCGTTTTTCTCGTGCGCGGCGTCGGAGTTCGTGGAGCTGTTCGTGGGGGTGGGTGCTTCGAGGGTGAGGGATTTGTTCGAGAAGGCGAAGAACAAGGCACCGTGCATTGTCTTCATTGATGAGATTGACGCCGTTGGGAGGCAGAGAGGGGCGGGCCTCGGAGGTGGGAATGATGAGAGGGAACAGACTATTAACCAGCTTCTCACGGAGATGGATGGGTTTTCTGGTAACTCTGGTGTCATCGTTTTGGCTGCGACTAACAGACCCGATGTTCTTGATTCGGCCTTGTTGAGGCCTGGCCGGTTCGATAGACAGGTTACTGTGGATAGGCCTGATGTTGCAGGCAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCTCTTGCAAAGGATGTTGACTTTGAAAAAATTGCAAGGAGAACCCCGGGATTCACAGGGGCTGATCTGCAGAATCTGATGAATGAGGCAGCTATTCTTGCAGCCAGGCGTGACCTCAAGGAAATAAGTAAAGATGAGATATCTGATGCTCTGGAAAGGATCATAGCTGGTCCCGAGAAGAAAAATGCTGTAGTCTCAGATGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTCTAGTGGGTGCTTTAATGCCTGAATATGATCTTGTAGCCAAGATATCAATTATACCTCGTGGCCAAGCTGGTGGTCTCACATTTTTTGCTCCAAGCGAAGAGAGGCTCGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCTGTTGCTCTGGGTGGAAGAGTTGCAGAAGAGGTTATTTTTGGCCGGGAAAATGTCACCACCGGAGCATCAAATGACTTCATGCAAGTTTCACGAGTGGCAAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAAATTGGACAAGTTGCCATTGGTGGACCTGGTGGAAATCCATTTTTGGGTCAACAGATGTCAACACAAAAGGATTACTCCATGGCAACTGCGGATGTAGTGGATGCGGAAGTTAGGGAACTGGTTGAGAGAGCATATTCTAGGGCAACACATATTATCACAACTCACATTGACATTCTTCACAAGCTTGCTCAACTTCTAATAGAAAAAGAAACTGTGGATGGTGAAGAGTTCATGAGTCTATTCATTGATGGAAAAGCCGAATTATATGTTGCATAG 2136 0.5234 MAFATSALLSSNFIGRKVLVPTPKTTKPSTPLPLQQLRILNAAAKEKKSQVKSASSKAALAALIVSSASLSPQALGADNVTPAPAPAPPPVIEAQQTQSNPSNASSPFSQNLLMTAPKPQASPDLPEGTQWRYSEFLNAVKKGKVERVRFNKDGSALQLTAVDGRRASVIVPNDPDLIDILAMSGVDISVAEAESGNGLFNIIGNLLFPFLAFAGLFFLFRRAQGGPGGPGGLGGPMDFGRNKSKFQEVPETGVTFGDVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGVPFFSCAASEFVELFVGVGASRVRDLFEKAKNKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDLVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGRENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYSRATHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00218 711 Gene3D - 427 502 - -
Cca07g00218 711 Pfam ATPase family associated with various cellular activities (AAA) 294 425 IPR003959 GO:0005524|GO:0016887
Cca07g00218 711 Pfam AAA+ lid domain 448 491 IPR041569 -
Cca07g00218 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 497 IPR027417 -
Cca07g00218 711 MobiDBLite consensus disorder prediction 77 127 - -
Cca07g00218 711 SUPERFAMILY FtsH protease domain-like 507 701 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca07g00218 711 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 711 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca07g00218 711 CDD AAA 260 425 - -
Cca07g00218 711 Gene3D Peptidase M41 503 706 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Cca07g00218 711 PANTHER METALLOPROTEASE M41 FTSH 52 703 - -
Cca07g00218 711 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 52 703 - -
Cca07g00218 711 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 200 700 IPR005936 GO:0004176|GO:0004222|GO:0016020
Cca07g00218 711 ProSitePatterns AAA-protein family signature. 396 414 IPR003960 GO:0005524|GO:0016887
Cca07g00218 711 SMART AAA_5 289 428 IPR003593 -
Cca07g00218 711 MobiDBLite consensus disorder prediction 92 117 - -
Cca07g00218 711 Gene3D - 244 426 IPR027417 -
Cca07g00218 711 Gene3D - 126 197 - -
Cca07g00218 711 Coils Coil 34 54 - -
Cca07g00218 711 Pfam Peptidase family M41 507 700 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00218 Cca-Chr7 2788875 2793288 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00218 07 2788875 2793288 Cca07g00218 07 2788875 2793288 ECH
Cca05g00435 05 9556200 9558799 Cca07g00218 07 2788875 2793288 PCT