Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00171 ATGGCTTTCTCCTCTTCCAAGGCACTTGTCCTTGCATGCTCCTTCTTCCTATTTGCTTCTTTGGCTTTTGGACGCGATTTCTCCATTGTTGGCTATTCATCGGAGGACTTAAAGTCCATGGATAAGCTCATTGAGCTCTTTGAATCTTGGATGTCAAAACACTGCAAGATTTATGAGAGCATTGAGGAGAAGCTTCTTAGGTTCGAGATTTTCAAAGACAACTTAAAGCACATTGATGAGACAAATAAGGTGGTCAGCAACTACTGGCTTGGTTTGAATGAGTTTGCTGATTTGAGCCACCAAGAGTTTAAGAAAAAGTATTTGGGACTTAAGATTGATTACTCTACAAGGAGAGAGTCTCCAGAGGAATTCTCTTATAAAGATGTTGAATTGCCAAAGTCAGtggattggagaaagaaaggtgctgttaccccagtcaagaaccaaggttcatgtggtagctgctgggcgttttccactgttgcagcggttgaaggaataaaccagattgtgactggaaatttgacatcattgtctgagcaagacttgattgactgtgacaaaacttacaacaatggttgcaatggtggtctcatggactatgcattctcctttattgtagaaaacggtggactccataaagaggaagattatccttaCATTATGGAAGAAGGTACTTGCGAGATGACAAAGGAAGAAACCGAAGTTGTGACTATTAGTGGCTACCATGACGTGCCACAAAACAATGAACAGAGCTTATTGAAAGCACTTGCAAACCAACCCCTCAGTGTTGCCATAGAGGCTTCAGGCAGAGATTTTCAATTTTATAGTGGGGGTGTTTTTGATGGACATtgtggaagtgagctagatcacggtgtggcagctgttggatacggaagttcaaaaggagtggattatatcatagtgaaaaattcatggggatctaaatggggagagaaaggatacataagaatgaagaggaacatTGGAAAGCCAGAGGGTATTTGCGGAATCCTCAAGATGGCTTCTTATCCCACTAAGAAGAAATAA 1050 0.2581 MAFSSSKALVLACSFFLFASLAFGRDFSIVGYSSEDLKSMDKLIELFESWMSKHCKIYESIEEKLLRFEIFKDNLKHIDETNKVVSNYWLGLNEFADLSHQEFKKKYLGLKIDYSTRRESPEEFSYKDVELPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQDLIDCDKTYNNGCNGGLMDYAFSFIVENGGLHKEEDYPYIMEEGTCEMTKEETEVVTISGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSELDHGVAAVGYGSSKGVDYIIVKNSWGSKWGEKGYIRMKRNIGKPEGICGILKMASYPTKKK 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00171 349 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Cca07g00171 349 PRINTS Papain cysteine protease (C1) family signature 291 301 IPR000668 GO:0006508|GO:0008234
Cca07g00171 349 PRINTS Papain cysteine protease (C1) family signature 306 312 IPR000668 GO:0006508|GO:0008234
Cca07g00171 349 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 347 - -
Cca07g00171 349 Pfam Papain family cysteine protease 131 346 IPR000668 GO:0006508|GO:0008234
Cca07g00171 349 CDD Peptidase_C1A 132 345 IPR039417 -
Cca07g00171 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 306 325 IPR025661 -
Cca07g00171 349 SMART pept_c1 131 346 IPR000668 GO:0006508|GO:0008234
Cca07g00171 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 289 299 IPR025660 -
Cca07g00171 349 PANTHER - 24 347 - -
Cca07g00171 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Cca07g00171 349 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Cca07g00171 349 SUPERFAMILY Cysteine proteinases 42 346 IPR038765 -
Cca07g00171 349 Gene3D Cysteine proteinases 26 348 - -
Cca07g00171 349 SMART Inhibitor_I29_2 47 103 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00171 Cca-Chr7 2166541 2168255 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00171 07 2166541 2168255 Cca07g00171 07 2166541 2168255 ECH
Cca05g00328 05 6952235 6955658 Cca07g00171 07 2166541 2168255 PCT