Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01426 ATGATCCAAGAGCTGTTGGATGGTGCTAGTGCTAGTGTCATAGCAGGAGAAAGGAAAATCTCCATTAATGAAGGAAGAGGACTTCTTCTAACACCACCTACATCATCATCTCTTTCTTCCACAATAACTATCGCCACTACCACCGTTACTGCCACCACTACCACCGTCACTTCCTCGAGTTCAGAGAACCAGAACTTGAGGTGTCCCCGTTGTGATTCATCAAACACGAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGCCGTCGTTACTGGACCAAAGGTGGTGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAACAAGAGCTCCGCCGCTGGCATGTCCAACTCGTTGGCGGCAAAGCAAACCGCCTCAAAGATGAAAGCGGTAGCATCAGAGTTTGGAAGGTCACCAGGATTCTTCGACCAAGAGCTTCCACAAACCCCAATCCTGTGGGGTTCACCGCAAAACACTCAACTGATGGCTTTACTAAGAGCTTCAcaaaaccaaaatcaaaaccctaaccctaaccCTAGTCCCATGTCAATTGCTGTCAAAGAAGAAGGGAACTTAATGGGATCCCAGTCCCACATGATGACTGAGCCATTAAATGGGTTGATGAATCCTAGAACACTAGGCTATGATGGTGTTGGAGAATTTCCTTCACTTGGTCTATGCAGCTCTTTTTGGAGGAACAATCAAGATCAAAATCAACACCAAAACAACGGTTTTGTACTTGGAGAACATCAAAGTAGTGGAGTTCAAGAACTTTTCCACAAGCTCAGATCCTCTTCATCTGTTAATTATTGCTGCAGTGATAACTCACCAGTGTTTCTGGACAACGTGGCTTCTTCATCTTCTTTGTCCAACATTTTGGAGTCATCTTCAGTTTCTGCGAGTGAATTCGGGTGCTGGAATATTCCAACCCATTCCTGGTCAGATCTTCCCACAACCCATGGAGTATATCCTTAA 1005 0.4448 MIQELLDGASASVIAGERKISINEGRGLLLTPPTSSSLSSTITIATTTVTATTTTVTSSSSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSAAGMSNSLAAKQTASKMKAVASEFGRSPGFFDQELPQTPILWGSPQNTQLMALLRASQNQNQNPNPNPSPMSIAVKEEGNLMGSQSHMMTEPLNGLMNPRTLGYDGVGEFPSLGLCSSFWRNNQDQNQHQNNGFVLGEHQSSGVQELFHKLRSSSSVNYCCSDNSPVFLDNVASSSSLSNILESSSVSASEFGCWNIPTHSWSDLPTTHGVYP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01426 334 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Cca06g01426 334 Pfam Dof domain, zinc finger 64 120 IPR003851 GO:0003677|GO:0006355
Cca06g01426 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 332 IPR045174 GO:0003700|GO:0006355
Cca06g01426 334 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Cca06g01426 334 PANTHER F-BOX FAMILY PROTEIN 32 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01426 Cca-Chr6 29116444 29118155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01426 54 129 C2C2-Dof Transcription Factor Family AT5G60200 69.737 2.78e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca06g01426 zf-Dof 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01426 - - gmx:100800420 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01426 06 29116444 29118155 Cca11g01264 11 32534906 32536488 PCT