Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01301 ATGGAAACCACCTCGGTTTCCAAATTGCCGTTTGCATTCTTCTGCTTGGCATTGTGGTTGGGTTATCAGCTGCAGCGGGTTCACTGTACCGTTGCTTACGACCGAAAGGCCATCCTTATCAATGGCCAAAGGAGAATCCTTTTCTCAGGCTCCATACATTACCCCAGAAGTACCCCAGATATGTGGGAAGATCTGATTTTCAAGGCTAAAGAGGGGGGTATAGACGTCATTGAAACCTACGTCTTTTGGAATATTCATGAGCCTTCTCAAGGCAATTACAACTTTGAAGGAAGGTATGATCTGGTGAGGTTTGTGAAGACAGTACAGAAAGCGGGGCTATACGCTCATCTTCGCATTGGACCTTATGTCTGTGCAGAATGGAATTTCGGAGGATTTCCTGTTTGGCTCAAGTATGTTCCGGGCATTAGCTTTAGAACAGACAATGAACCTTTCAAGAAAGCAATGAAAGGGTTTACTGAGAAGATTGTGGGAATGATGAAGAGTGAAAGTCTCTATGAATCCCAGGGTGGTCCTATTATACTCTCTCAGATTGAAAATGAGTATGGGGGACAGAGTAAATTATTTGGACCTGCTGGCCAAAAGTATGTGAACTGGGCTGCAAAAATGGCTATTGAAACGGGAACAGGGGTCCCATGGGTGATGTGCAAGGAAGATGATGCACCTGATCCAGTGATAAACACATGCAATGGCTTTTATTGCGATTATTTTACTCCTAATAAACCCTATAAGCCTACAATTTGGACAGAGGCTTGGAGTGGCTGGTTTACCGAGTTTGGAGGTCCAATTCATGAAAGACCTGTTCAGGATTTGGCATTTGCTGTTGGCCGATTCATACAAAAAGGAGGATCCTTTGTAAACTACTATATGTATCATGGAGGAACCAATTTTGGCCGAACAGCTGGAGGCCCTTTCATCACTACAAGTTATGACTATGATGCTCCACTGGATGAATATGGTTTGATTAGACAACCAAAGTATGGTCATCTAAAGGAGCTTCATAAGGCTATCAAGATGTGTGAGCGGGCTTTAGTTTCAACTGATCCTGTTGTTACTTCATTAGGGAACTTCCAGCAGGCTCATGTATACTCTACAGAATCTGGAGACTGTGCTGCTTTCCTTGCAAACTATGATACAAAATCTTCTGTTAGGGTGATGTTCAACAATATGCACTATAACTTACCTCCTTGGTCCATCAGCATCCTCCCTGATTGTAGAAATGTTGTTTTTAATACAGCAAAAGTTGGAGTGCAAACATCTCAGATGCAAATGTTGCCAACAAATACTCGGATGTTTTCATGGGAGAGTTTTGATGAAGATATTTCTTCTCTAGATGATGGCTCTGCCACAATCACTACTTCTGGTCTCTTGGAACAGATAAATGTAACACGGGATTCAAGTGATTATCTTTGGTATATAACTAGTGTTGATATAGGTTCATCCGAATCCTTTCTCCATGGTGGCAAACTCCCCACTCTCATTGTTCAATCCACAGGCCATGCAGTGCATGTTTTTATCAATGGTCAACTTTCTGGTTCTGCATATGGAACAAGGGAGGATAGGAGATTCAGATATACTGGCCCGATAAACCTTCGTGCTGGAACAAACAAAATAGCTCTACTCAGTGTTGCTGTTGGACTTCAAAACGTGGGAGGACATTTTGAGACTTGGAACACAGGAATCCTTGGTCCAGTTGCACTCCGTGGACTTGACCAAGGAAAGTTGGACTTATCTTGGCAGAAATGGACTTACCAGGTTGGGTTGAAAGGAGAGGCCATGAATCTTGCATCTCCAAATGGTATCTCTTCGGTAGAGTGGATGGATTCAGCATTAGTTTTAGATAAAAATCAACCATTGACATGGCACAAGACTTATTTCGATACTCCAGCAGGAGACGAGCCATTGGCATTGGACATGGAAGGTATGGGTAAAGGTCAAATATGGATTAATGGGCTGAGCATTGGAAGATACTGGACTGCTCCAGCTACCGGTAATTGCAATGGTTGCAGCTACGCTGGCTCATTCCGCCCTCCAAAGTGTCAGGTTGGTTGTGGCCAACCAACCCAACGATGGTACCATGTACCTAGATCATGGTTGAAGCCAAATCATAATCTGTTAGTTGTCTTTGAGGAACTTGGGGGAGATCCTTCAAGAATTTCACTTGTAAAGAGATCAGTGGGAAGTGTGTGCGCTGATGTGTCTGAGTACCACCCAAATATTAGGAATTGGCACATTGAGAGCTTCGGAAAATCAGAGGTGTTCCATCCTCCAAAAGTTCACTTGCATTGTAGTCTTGGCCAGGCCATTTCTTCCATTAAATTTGCAAGCTTTGGAACTCCTTTGGGGACCTGTGGGAACTATGAGCAGGGAGTTTGTCATTCTCCCGCTTCCTATGCCATCTTAGAGAAGAAATGTATAGGAAAACGAAGATGCACGGTCAGTGTATCAAACAGTAACTTTGGACACGACCCATGTCCGAATGTGTTGAAGCGGTTATCAGTTGAAGCTGTTTGTGCTCCAACTACTAGCAATAGAAGGGGATGA 2562 0.4348 METTSVSKLPFAFFCLALWLGYQLQRVHCTVAYDRKAILINGQRRILFSGSIHYPRSTPDMWEDLIFKAKEGGIDVIETYVFWNIHEPSQGNYNFEGRYDLVRFVKTVQKAGLYAHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNEPFKKAMKGFTEKIVGMMKSESLYESQGGPIILSQIENEYGGQSKLFGPAGQKYVNWAAKMAIETGTGVPWVMCKEDDAPDPVINTCNGFYCDYFTPNKPYKPTIWTEAWSGWFTEFGGPIHERPVQDLAFAVGRFIQKGGSFVNYYMYHGGTNFGRTAGGPFITTSYDYDAPLDEYGLIRQPKYGHLKELHKAIKMCERALVSTDPVVTSLGNFQQAHVYSTESGDCAAFLANYDTKSSVRVMFNNMHYNLPPWSISILPDCRNVVFNTAKVGVQTSQMQMLPTNTRMFSWESFDEDISSLDDGSATITTSGLLEQINVTRDSSDYLWYITSVDIGSSESFLHGGKLPTLIVQSTGHAVHVFINGQLSGSAYGTREDRRFRYTGPINLRAGTNKIALLSVAVGLQNVGGHFETWNTGILGPVALRGLDQGKLDLSWQKWTYQVGLKGEAMNLASPNGISSVEWMDSALVLDKNQPLTWHKTYFDTPAGDEPLALDMEGMGKGQIWINGLSIGRYWTAPATGNCNGCSYAGSFRPPKCQVGCGQPTQRWYHVPRSWLKPNHNLLVVFEELGGDPSRISLVKRSVGSVCADVSEYHPNIRNWHIESFGKSEVFHPPKVHLHCSLGQAISSIKFASFGTPLGTCGNYEQGVCHSPASYAILEKKCIGKRRCTVSVSNSNFGHDPCPNVLKRLSVEAVCAPTTSNRRG 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01301 853 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 176 188 IPR019801 GO:0004553|GO:0005975
Cca06g01301 853 Pfam Beta-sandwich domain in beta galactosidase 350 421 IPR041392 -
Cca06g01301 853 Pfam Glycosyl hydrolases family 35 38 342 IPR031330 -
Cca06g01301 853 PANTHER BETA-GALACTOSIDASE 3 4 840 - -
Cca06g01301 853 PANTHER BETA-GALACTOSIDASE RELATED 4 840 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 Pfam Galactose binding lectin domain 767 844 IPR000922 GO:0030246
Cca06g01301 853 Gene3D - 609 736 - -
Cca06g01301 853 SUPERFAMILY Galactose-binding domain-like 405 577 IPR008979 -
Cca06g01301 853 ProSiteProfiles SUEL-type lectin domain profile. 759 845 IPR000922 GO:0030246
Cca06g01301 853 Gene3D - 751 852 IPR043159 -
Cca06g01301 853 Gene3D Glycosidases 27 347 - -
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 41 58 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 62 80 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 117 136 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 174 189 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 253 268 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 290 305 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 310 326 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 623 637 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 PRINTS Glycosyl hydrolase family 35 signature 650 666 IPR001944 GO:0004553|GO:0005975
Cca06g01301 853 SUPERFAMILY (Trans)glycosidases 29 347 IPR017853 -
Cca06g01301 853 SUPERFAMILY Galactose-binding domain-like 586 751 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01301 Cca-Chr6 27750691 27756572 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00319 05 6718878 6724593 Cca06g01301 06 27750691 27756572 ECH
Cca07g00328 07 4361019 4366264 Cca06g01301 06 27750691 27756572 ECH
Cca06g01301 06 27750691 27756572 Cca06g01301 06 27750691 27756572 ECH