Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00639 ATGTCTGAGGTTATTAAAGACTCGGCCATTAAGCTTTTTGGTAGGACAATTTCTCTGCCACGCAACAACGAGGCTTCTGCTAATGATCCTTCTGAACATGCTCAAGATTGTTCTCATCACAACAATCATCCACGTGAAGTGTGCTCTACACCGGAACATGAAGCTGAGAGGGATAAGGAACCATCAAGGAAAGAACTCACCTCAACACAAGATCATGAAGATGCCTCACATGATCAAACCCCAGAGGAACCAAAATCTCCAACATCCTCAGGCAATCCGGAGAACCCCAAAACCCCCTCAACCGAAAGAGAGACTTCTTTACTGAAACCCTCAAAAAATGGAGACCAAAGCGACACAACAAGCTTATCACAGGACAAAGCTCCAAAGAAACCAGACAAGGTGCTTCCATGCCCTCGATGCAACAGCATGGACACCAAATTCTGCTACTACAACAACTACAACGTGAACCAGCCTCGCCACTTCTGCAAGCACTGCCAGAGATATTGGACCGCAGGAGGAACCATGAGGAACGTGCCAGTTGGTGCTGGTCGCCGCAAGAACAAAAACTCTCCCTCTTCTGCATCACACTATCGCCAAATCATGCTTCCCGAGACTCTCCAAAATGGATCATTGCACACTAGTGCTGTCTTGACCTTTGGATCAGACTCTCCTCTTTGTGACTCCATGGCTTCTGTGTTAAGCCTCGGAGATAAATCACAAAATGGTGTCCTAAACGGGTTCCATGCACCTAAGCATAATACTAATACTAATGGGGATGATGTTGATAACTCTAACTCACTTGGTGGTTCTATTATGGCTTCAACTTTGTGTGACAATGCTACTAGCACACATGAAGAATCAGTGGATAATAAGAGTTATCAAGGTTTCACTCCTTGGCCTTATCCATGGAACCCTTCTGGATTTTGCCATCCTGTGTCATTCTACCCCACACCACCATTCTGGGGTTGCATGCCAATGCCAGTACCACCAGCATCACCCTCTTGGAGTTCCCACTCCTTCCCTAATTACCCACCTGCCCCTACTAGTTCTGGTCCAAACTCACCAACCTTGGGGAAACACTCAAGAGATGGGGACATTTTATTTCAGCCTGGCACAGAAAATAACAAGAGTGTGTTGATCCCCAAGACACTGAGAATTGATGACCCTACTGAGGCTGCAAAGAGCTCCATATGGTCAACACTAGGGATCAAGAATGACAAGTTAAATAACCATTCCCTCAATGGAGGAGGACTTTTCAAGGCATTTGCATCAAAGGGTGATGACAAGAACAAGAACCATGGGATGGTGGTTGAAGCATCACCAGTGCTGCAAGCCAACCCTGCTGCGTTGTCAAGGTCCCTTGTCTTCCATGAGAGGACATAA 1383 0.4642 MSEVIKDSAIKLFGRTISLPRNNEASANDPSEHAQDCSHHNNHPREVCSTPEHEAERDKEPSRKELTSTQDHEDASHDQTPEEPKSPTSSGNPENPKTPSTERETSLLKPSKNGDQSDTTSLSQDKAPKKPDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSPSSASHYRQIMLPETLQNGSLHTSAVLTFGSDSPLCDSMASVLSLGDKSQNGVLNGFHAPKHNTNTNGDDVDNSNSLGGSIMASTLCDNATSTHEESVDNKSYQGFTPWPYPWNPSGFCHPVSFYPTPPFWGCMPMPVPPASPSWSSHSFPNYPPAPTSSGPNSPTLGKHSRDGDILFQPGTENNKSVLIPKTLRIDDPTEAAKSSIWSTLGIKNDKLNNHSLNGGGLFKAFASKGDDKNKNHGMVVEASPVLQANPAALSRSLVFHERT 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00639 460 MobiDBLite consensus disorder prediction 14 136 - -
Cca06g00639 460 Pfam Dof domain, zinc finger 132 189 IPR003851 GO:0003677|GO:0006355
Cca06g00639 460 MobiDBLite consensus disorder prediction 82 124 - -
Cca06g00639 460 ProSiteProfiles Zinc finger Dof-type profile. 135 189 IPR003851 GO:0003677|GO:0006355
Cca06g00639 460 ProSitePatterns Zinc finger Dof-type signature. 137 173 IPR003851 GO:0003677|GO:0006355
Cca06g00639 460 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 460 - -
Cca06g00639 460 PANTHER CYCLIC DOF FACTOR 2 1 460 IPR045174 GO:0003700|GO:0006355
Cca06g00639 460 MobiDBLite consensus disorder prediction 33 81 - -
Cca06g00639 460 MobiDBLite consensus disorder prediction 343 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00639 Cca-Chr6 18072197 18076158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g00639 5 458 C2C2-Dof Transcription Factor Family AT5G39660 39.364 3.97e-88 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca06g00639 zf-Dof 4.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00639 - - gmx:100775201 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00639 06 18072197 18076158 Cca06g00639 06 18072197 18076158 ECH
Cca06g00639 06 18072197 18076158 Cca03g00590 03 10242919 10246292 ECH
Cca06g00639 06 18072197 18076158 Cca11g01967 11 45063844 45066553 ECH
Cca06g00639 06 18072197 18076158 Cca07g02169 07 49860971 49864544 ECH