Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00586 ATGACACTGTACATGCCATTGTTCAGGTCATGTTCCACCTTAAGATCCCTCACCCAACTCCACGCCCACATTGTCGTCACTGGCCTCCACCACGACCCTCTTCCCTCCACCAAGCTCCTCGACTCCTACGCCCAAATGGGTTCTCTCCACTCATCAAGACTCATTTTTTACGCCCACCCATCTCCCGATTCCTTCATGTTCGCTGTCCTCGTCAAGTCTTACCTCACCCACCACTTGTTCCACCAAGTTCTTTCCCTCTACAACCACCACATTCAAAAGGGTTCACACCTCACCCAAAACTGCACCTTTCTTTACCCTTCTCTCCTAAAAGCTGTTTCCTGCGTTGGGGACTTGGTTACTGGCGCGAAACTGCATGGGAGGATTGTTGCATCCGGGCTCACCACTGATCATGTCATTGCCACTTCGTTGTTGGGGATGTACGGGGATTTGGGCTGTTTGAGTGGTGCTCGGAAGGTGTTTGATGAAATGCGTGTGAGAGATTTGGTTTCGTGGAGTTCGGTTATCTCGTGTTATATCGAGAATGGGTGGCCCATGGCAGGATTGGAGATGTTGCGTTGGATGGTTTCTGAGGGAATTGGACCGGACTCGGTTACGATGGTCAGCGTGGCTGAGGCTTGTGGCAAGGTTGGTTGCTTGAGGCTGGCGAAATCGGTGCATGGATATGTGATCAGGAAAGAGATGGATGGTTATGCTAGTTTGAGGAATTGTCTTATTGTTATGTATAGTCAGTGTGGTTACTTGAGTGGAGCTAAAGGGGTGTTTGAAAGCTTGGCTGATCGAAGTACTGCTTGTTGGACTTCTATGATTTCGTCGTGTAATCAAAACGGGTGCTTTGAGGAAGCGATTCATGTTTTTAGGCAGATGCAGGAGTCGGAAGTGGAAGTCAATGGGGTGACGATGATTAGTGTTCTGTGTTGCTGTGCTAGGTTAGGCTTGTTGAAAGAGGGAAAGTCTGCTCATTGCTTTATTTTGAGGAGAGAAATGGATGGTGATGATCTTGATCTAGGGCCTGCACTGATGGATTTCTATGCTGCATGCTGGAAAATAAGCAGTTGCGAAAAGCTTCTTTGTTTAGTTGGAAATTGCAGTGTTGTATCATGGAACACGCTCATATCGATTTATGCGCAGGAGGGTTTCAGCGAGGAGGCCATGGTGCTCTTTGCACGTATGTTGGCAAAGGGGCTGATGCCAGACTCATTTAGCTTAGCAAGTTCTATCTCAGCTAGTGCAGGTGCCGGTTCAATACAATTTGGACAGCAGATACACGGCCATGTCATGAAAAGAGGCTTTGGGGACGAATTTGTTCAGAACTCCTTGATGGACATGTATTCAAAATGTGGCTTTGTGGATTTGGCTTATACAATTTTCGACAAGATTAGGGAGAAAAGCATTGTGACATGGAACTGTATGATTTGTGGATTTTCTCAAAACGGAATTTCAGTAGAAGCACTTAGGCTATTCGATGAGATGTACTTCAATTGTCTGGATATTAATGAGGTGACCTTCTTAAGTGCAATTCAAGCTTGCTCCAATTCAGGTTATCTTGAGAAGGGAAAATGGATTCACCATAAGCTTATTGTATCTGGTGTGCAGAAGGATCTTTACATTGATACAGCTCTGGTTGACATGTATGCCAAGTGTGGAGACCTTAAAACGGCTGAAGGTATTTTTGATAGCATGCCAGAGAAAAGTGTGGTGTCATGGAGTTCCATGATTGCTGCTTATGGCATACATGGCCAAATAACTGCTGCCACCACCCTCTTCACTAAAATGGTAGAGTCAGATATTAAACCGAATGAAGTAACCTTCATGAATATCTTATCTGCTTGCAGGCATGCCGGATCAGTGGAAGAAGGGAAGTTCTACTTTAACTCAATGCGGGATTATGGCGTAGTACCCAATGCCGAGCATTTTGCCTCTATAATTGACCTTCTAAGCCGTGCCGGTGATATCAATGGAGCATATGAGATAATTAAGTCAACATGTCTGCCTATAGATGCTAGCATATGGGGTGCTTTGCTTAATGGATGTAGAATACACGGGAGGATGGACTTGATCAAAGGCATCCAGAAAGAACTTAGAGAAATAAGAACAGATGATACAGGATACTACACTTTGTTATCTAACATATATGCTGAAGGAGGAAACTGGTATGAATCCAAAAATGTGAGATCAAGGATGGAAGGAATGGGCCTAAAGAAGGTCCCCGGGTACAGTTCAATTGAGATAGATAAGAAAACCTACAGATTTGGAGCTGGAGATACTTCTTCTGAATGTCAAATGAAAGAAATTTATACATTTTTAGAAAATTTTCAAAGTTTGGCACAGGAACAAGGATGTGATGTAGAATGTTATGGTAAAATGTATGGTACTAGTATGTATTTTGAGGATTATAATGTCTATAAATTGCAGAGAGAAACAAGCAATGGCATTTGGAGCAAATCAGACCCATTTTAG 2478 0.4383 MTLYMPLFRSCSTLRSLTQLHAHIVVTGLHHDPLPSTKLLDSYAQMGSLHSSRLIFYAHPSPDSFMFAVLVKSYLTHHLFHQVLSLYNHHIQKGSHLTQNCTFLYPSLLKAVSCVGDLVTGAKLHGRIVASGLTTDHVIATSLLGMYGDLGCLSGARKVFDEMRVRDLVSWSSVISCYIENGWPMAGLEMLRWMVSEGIGPDSVTMVSVAEACGKVGCLRLAKSVHGYVIRKEMDGYASLRNCLIVMYSQCGYLSGAKGVFESLADRSTACWTSMISSCNQNGCFEEAIHVFRQMQESEVEVNGVTMISVLCCCARLGLLKEGKSAHCFILRREMDGDDLDLGPALMDFYAACWKISSCEKLLCLVGNCSVVSWNTLISIYAQEGFSEEAMVLFARMLAKGLMPDSFSLASSISASAGAGSIQFGQQIHGHVMKRGFGDEFVQNSLMDMYSKCGFVDLAYTIFDKIREKSIVTWNCMICGFSQNGISVEALRLFDEMYFNCLDINEVTFLSAIQACSNSGYLEKGKWIHHKLIVSGVQKDLYIDTALVDMYAKCGDLKTAEGIFDSMPEKSVVSWSSMIAAYGIHGQITAATTLFTKMVESDIKPNEVTFMNILSACRHAGSVEEGKFYFNSMRDYGVVPNAEHFASIIDLLSRAGDINGAYEIIKSTCLPIDASIWGALLNGCRIHGRMDLIKGIQKELREIRTDDTGYYTLLSNIYAEGGNWYESKNVRSRMEGMGLKKVPGYSSIEIDKKTYRFGAGDTSSECQMKEIYTFLENFQSLAQEQGCDVECYGKMYGTSMYFEDYNVYKLQRETSNGIWSKSDPF 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Cca06g00586 825 Pfam E motif 698 749 IPR046848 -
Cca06g00586 825 Gene3D Tetratricopeptide repeat domain 435 526 IPR011990 GO:0005515
Cca06g00586 825 Pfam PPR repeat 140 166 IPR002885 -
Cca06g00586 825 Pfam PPR repeat 271 298 IPR002885 -
Cca06g00586 825 Pfam PPR repeat 169 199 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 271 303 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 608 642 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 573 607 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 472 499 IPR002885 -
Cca06g00586 825 TIGRFAM PPR: pentatricopeptide repeat domain 442 472 IPR002885 -
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Cca06g00586 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 272 404 - -
Cca06g00586 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 13 277 - -
Cca06g00586 825 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 400 777 - -
Cca06g00586 825 Pfam PPR repeat family 370 408 IPR002885 -
Cca06g00586 825 Pfam PPR repeat family 469 517 IPR002885 -
Cca06g00586 825 Pfam PPR repeat family 570 617 IPR002885 -
Cca06g00586 825 Gene3D Tetratricopeptide repeat domain 594 769 IPR011990 GO:0005515
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Cca06g00586 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 400 777 - -
Cca06g00586 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 272 404 - -
Cca06g00586 825 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 277 - -
Cca06g00586 825 Gene3D Tetratricopeptide repeat domain 66 239 IPR011990 GO:0005515
Cca06g00586 825 Gene3D Tetratricopeptide repeat domain 343 434 IPR011990 GO:0005515
Cca06g00586 825 Gene3D Tetratricopeptide repeat domain 240 338 IPR011990 GO:0005515
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 571 605 IPR002885 -
Cca06g00586 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00586 Cca-Chr6 17038364 17040841 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00586 06 17038364 17040841 Cca06g00586 06 17038364 17040841 ECH