Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00585 ATGTCAAACTTGGCAACCTCACTCTCATTCTTCACCTTGACACTGTTGGCACTAGCAACTTGTTCCAATGCTGGCAGTGGCAGCATTGCAATCTACTGGGGCCAGAATGGCAATGAGGGTACCCTAGCAGAGGCATGTGCCACAGGGAACTATGAGTTTGCCATCTTGGCCTTCTTGCCAACTTTTGGCAATGGCCAAACCCCAATGATCAACCTTGCAGGGCACTGTGACCCCTACAGTGATGGCTGCACCAAGTTGAGCTCTGACATCAAATCATGCCAAGCCAAGGGCATCAAGGTGTTGCTGTCTTTGGGAGGAGGTGCTGGTAGCTACTCCCTTGCATCCCCTCAGGATGCAAGACAAGTGGCCACTTACCTTTGGAACAACTTCTTGGGGGGACAATCCCCTTCTCGCCCTCTTGGACCAGCTGTTCTTGATGGCATTGACTTTGACATTGAGGGAGGATCAAACCTTTATTGGGATGACCTTGCTAGGTACCTCAAAGGGTACAGCAATAAGGGCCAAAAAGTGTACTTAACTGCTGCCCCTCAATGCCCTTTTCCTGATGCTTGGATAGGGAATGCCCTCAAGACAGGTCTTTTTGACAATGTTTGGGTCCAATTCTACAACAACCCTCCTTGCCAATACTCTAGTGAAATTACCAACCTTGAAGATGCATGGAAGCAGTGGACTGCGGATATCCCAGCAAACAAGATCTTCTTGGGGCTACCAGCTTCCCCTGCGGCTGCAGGCAGTGGATTCATTGATGTGAATGATCTTACTTCCAAAGTGCTTCCAGCAATCAAGGACTCTTCCAAATATGGGGGTGTCATGCTGTGGTCTAGGTACTATGATGGTCAGAGTGGATACAGTTCCTCCATCAAGAGCCATTTCTACTTTCTCAGCACTGCTCTCTGGAACATTCTCTTGAGAAAAGAGCACAGTGGTTTTAAGGCTGAAGCAGCATGGATGTTCAGAGGGGGAGAACAACGGTCGGATGCAAGTTCAGAGCACAGTGAAAGTGCTAATGAGGATATCTTGATGTTCTTCTTTCAGCTGGACTTGGCCACTAGAGTACAGTATGCTTTAAATATGGAGCAGTATGACATTGCACAGCAGCTGAGAAACAAGCTTACTGAGGTTGAAGAAGAGGTAATCAAGCAACAACAATCAAAAAGGGGATTATCTTCAAAAAGTGAAGCTCAAGATAAAGCTCTAAGTATTATACGTCTTCGTTCAGACCTCCAGAATGCTGTTGAGAATGAGGATTATGCCTTGGCTGCTGAATTACGTGATAAAATTTCCAAACTTGAAGCAGAGTCTCTAGCTGCATCAGCTAAAGCTTTGGCACATGAAAATGCACAATATGCATTCCGATTGGGGCAGAAAGTGAAACATAAAAAATTTGGCTATAAAGCCGTGATCTGTGGAATGGATCCAGTATGCGGTGAATCAAGTTCATGGATGGAAAATGCACAGGTTAACAAATTGTCTCGTGGTTCCACTCAACCATTTTATCAGGTTCTTGTTGATGTACATGCTGAACCAAATCTATTGGTTGCATATGTTCCAGAGGAGAATCTTGTAATTCCTGACAAACCAGACATTGGAAGGTTTGATCATCCCTACCTCTCTTTTCTATTCTATGGAATGGATTCAGCTGGAGATTTCATCCCAATTAAACAACTACGAGAGAAGTACAATAGACCAAGGCATGAAATACCCATTGACCCACCAAATGATGAAGATGGAGGCAAAGCTTAA 1764 0.4512 MSNLATSLSFFTLTLLALATCSNAGSGSIAIYWGQNGNEGTLAEACATGNYEFAILAFLPTFGNGQTPMINLAGHCDPYSDGCTKLSSDIKSCQAKGIKVLLSLGGGAGSYSLASPQDARQVATYLWNNFLGGQSPSRPLGPAVLDGIDFDIEGGSNLYWDDLARYLKGYSNKGQKVYLTAAPQCPFPDAWIGNALKTGLFDNVWVQFYNNPPCQYSSEITNLEDAWKQWTADIPANKIFLGLPASPAAAGSGFIDVNDLTSKVLPAIKDSSKYGGVMLWSRYYDGQSGYSSSIKSHFYFLSTALWNILLRKEHSGFKAEAAWMFRGGEQRSDASSEHSESANEDILMFFFQLDLATRVQYALNMEQYDIAQQLRNKLTEVEEEVIKQQQSKRGLSSKSEAQDKALSIIRLRSDLQNAVENEDYALAAELRDKISKLEAESLAASAKALAHENAQYAFRLGQKVKHKKFGYKAVICGMDPVCGESSSWMENAQVNKLSRGSTQPFYQVLVDVHAEPNLLVAYVPEENLVIPDKPDIGRFDHPYLSFLFYGMDSAGDFIPIKQLREKYNRPRHEIPIDPPNDEDGGKA 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00585 587 Coils Coil 427 447 - -
Cca06g00585 587 Pfam Hemimethylated DNA-binding protein YccV like 457 554 IPR011722 GO:0003677
Cca06g00585 587 PANTHER ACIDIC ENDOCHITINASE 4 297 - -
Cca06g00585 587 SMART YccV_like_2_a 455 559 IPR011722 GO:0003677
Cca06g00585 587 TIGRFAM yccV: hemimethylated DNA binding domain 456 557 IPR011722 GO:0003677
Cca06g00585 587 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 301 IPR001223 GO:0005975
Cca06g00585 587 CDD GH18_hevamine_XipI_class_III 27 296 IPR045321 -
Cca06g00585 587 PANTHER ENDOCHITINASE 4 297 - -
Cca06g00585 587 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 145 153 IPR001579 GO:0004553|GO:0005975
Cca06g00585 587 Gene3D Glycosidases 27 298 - -
Cca06g00585 587 Coils Coil 364 391 - -
Cca06g00585 587 Pfam UvrB/uvrC motif 408 439 IPR001943 GO:0005515
Cca06g00585 587 Pfam Glycosyl hydrolases family 18 29 285 IPR001223 GO:0005975
Cca06g00585 587 SUPERFAMILY YccV-like 457 553 IPR036623 GO:0003677
Cca06g00585 587 SUPERFAMILY (Trans)glycosidases 25 295 IPR017853 -
Cca06g00585 587 Gene3D - 454 556 IPR036623 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00585 Cca-Chr6 17027898 17037842 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00585 06 17027898 17037842 Cca06g00585 06 17027898 17037842 ECH