Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00571 ATGGACGACGACAAAGACAGACCACCTTCCGATCCTTCCGCCGCCGCCGCTGAGTTCGCCGGCGACTCGAGTTGGACACTCGCCGCGGATGACTCCGACGGAGCATACTTTTTCTCCGGAGACAGGGAGCGAAGCATACTCAGGGAGTTCGGGTGGAACCTCGAACCGGACCAGGCGAACCGGATCGGCACCGACGACGGACTGTGGACACCGGTTCAGTCCTCTCTGAGCGGTTCGATTGAACCGGCCGCTGCGGCGAATAACCACTCGGTGTCTTCGAGCTCCAGCGAGGATCTTCCGGAGAAATCCACCGTCTCCGACGAGAAACCGCCTGAGATTCCGTGTAAAGGTAAAAAGAAGGGGCAAAAGCGAAtacggcagccacggtttgcatttatgaccaagagtgaagttgatcatcttgaggatggctacagatggcggaagtatggccagaaggccgttaaaaatagtcctttccctaggagctactaccgctgcacaaacagcaaatgcacggtgaagaaaagggttgaacgctcttccgaggatccaacgattgtgattactacatatgaagggcaaCACTGTCATCATACCGTTGGATTTCCTCGAGCGGGAATCATTAGTCATGAAGCTGCCTTTGCGGGCCAGTTGGCTCCTACAATGTCACAATTCTATTATCCAATTCAATCACCCAGAGAGAACAGTACCTTTAGTTCTATTTCTCAGCCTTGCCATGCTCAAGATGAAGCTGGAGGAGGATCCAGTGCTATAATGCCAACTGATGCATCGTCACAGCAGCGTCCCACGGATGAAGGGTTGCTTGGAGATATGGTACCCCCGGGAATGCGCATCAGATGA 864 0.4144 MDDDKDRPPSDPSAAAAEFAGDSSWTLAADDSDGAYFFSGDRERSILREFGWNLEPDQANRIGTDDGLWTPVQSSLSGSIEPAAAANNHSVSSSSSEDLPEKSTVSDEKPPEIPCKGKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRAGIISHEAAFAGQLAPTMSQFYYPIQSPRENSTFSSISQPCHAQDEAGGGSSAIMPTDASSQQRPTDEGLLGDMVPPGMRIR 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00571 287 MobiDBLite consensus disorder prediction 55 127 - -
Cca06g00571 287 SMART WRKY_cls 141 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00571 287 Pfam WRKY DNA -binding domain 142 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca06g00571 287 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 214 IPR044810 GO:0003700
Cca06g00571 287 SUPERFAMILY WRKY DNA-binding domain 133 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00571 287 MobiDBLite consensus disorder prediction 101 118 - -
Cca06g00571 287 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 15 214 - -
Cca06g00571 287 MobiDBLite consensus disorder prediction 238 287 - -
Cca06g00571 287 MobiDBLite consensus disorder prediction 67 100 - -
Cca06g00571 287 Gene3D WRKY domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca06g00571 287 ProSiteProfiles WRKY domain profile. 136 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00571 Cca-Chr6 16799551 16807250 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca06g00571 WRKY 1.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00571 06 16799551 16807250 Cca06g00571 06 16799551 16807250 ECH